RetrogeneDB ID: retro_mputfur_61

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897155.1:1339273..1339771(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000018987
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000013832
• Aliases: None
• Description: None

Sequence

>retro_mputfur_61
CTGCCACCTAAGTTCAATCCCAACAAGATCAAATTCATACACCTGAGCTGTACCCATGGGGAAGTTTGTGCCACATCTGC
CCTGGCTCCAAAGATTGTCCTGCTCGGTCTGGCTCCAAAAAAGGTTGGTGATGACATTGTCAAAGCAACCAGAAATTGGA
AGTGTTTGAAGATTACAGTGAAACTGACCATTCAGAAAAGATATGCCCATATTGGAATGGTAACTTCTGCCTTTTACATG
ATTATCAAAGCCCTCAAGGAACCACCAAGAGACAGAAAAATGCAGAAAAACATTAAGTACAGTGGAAATGTCATGTTTGA
TGGGACTGTCAGCATTGCCCAACAAATGTTGCACCAATCTTTAGCCATAGAACTCTCTGGAACTATTAAGGGGATCCTGG
GGTTTGCTCAAGTTGTGGGCTGCAATGTTGATGGATGCCACCCTCATGACATCATAGGTGACATCAATAGTGGTGCAGTA
GAATGCTCAGCTAGTTAA

Alignment

ORF - retro_mputfur_61 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.29 %
• Parental protein coverage: 86.01 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQ
          .PPKF.PN.IK...L.CT.GEV.ATSALAPKI..LGL.PKKVGDDI.KAT..WK.L.ITVKLTIQ.R.A.
Retrocopy LPPKFNPNKIKFIHLSCTHGEVCATSALAPKIVLLGLAPKKVGDDIVKATRNWKCLKITVKLTIQKRYAH

Parental  IEVVPSASALIIKALKEPPRDRKKQKNSAVKHSGNITFDEIVNIARQMRHRSLARELSGTIKEILGTAQS
          I..V.SA...IIKALKEPPRDRK.QKN...K.SGN..FD..V.IA.QM.H.SLA.ELSGTIK.ILG.AQ.
Retrocopy IGMVTSAFYMIIKALKEPPRDRKMQKN--IKYSGNVMFDGTVSIAQQMLHQSLAIELSGTIKGILGFAQV

Parental  VGCNVDGRHPHDIIDDINSGAVECPA
          VGCNVDG.HPHDII.DINSGAVEC.A
Retrocopy VGCNVDGCHPHDIIGDINSGAVECSA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_61 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_61 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 17 parental genes, and 344 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000016712	15 retrocopies	retro_amel_1131, retro_amel_1172, retro_amel_1208, retro_amel_1400, retro_amel_1508, retro_amel_1558, retro_amel_17, retro_amel_174, retro_amel_1856, retro_amel_203, retro_amel_260, retro_amel_293, retro_amel_688, retro_amel_876, retro_amel_952,
Canis familiaris	ENSCAFG00000020136	31 retrocopies	retro_cfam_1016, retro_cfam_1139, retro_cfam_1141, retro_cfam_1143, retro_cfam_1151, retro_cfam_1166, retro_cfam_1181, retro_cfam_1203, retro_cfam_1257, retro_cfam_1470, retro_cfam_1484, retro_cfam_1558, retro_cfam_1591, retro_cfam_1597, retro_cfam_1632, retro_cfam_1796, retro_cfam_1880, retro_cfam_1986, retro_cfam_2009, retro_cfam_2094, retro_cfam_2194, retro_cfam_437, retro_cfam_588, retro_cfam_706, retro_cfam_728, retro_cfam_748, retro_cfam_759, retro_cfam_76, retro_cfam_850, retro_cfam_950, retro_cfam_955,
Cavia porcellus	ENSCPOG00000013769	18 retrocopies	retro_cpor_1, retro_cpor_1069, retro_cpor_1108, retro_cpor_1373, retro_cpor_140, retro_cpor_1473, retro_cpor_1510, retro_cpor_1513, retro_cpor_1514, retro_cpor_313, retro_cpor_342, retro_cpor_553, retro_cpor_556, retro_cpor_664, retro_cpor_874, retro_cpor_910, retro_cpor_921, retro_cpor_954,
Equus caballus	ENSECAG00000010622	17 retrocopies	retro_ecab_1024, retro_ecab_1027, retro_ecab_1119, retro_ecab_157, retro_ecab_335, retro_ecab_379, retro_ecab_457, retro_ecab_475, retro_ecab_605, retro_ecab_666, retro_ecab_679, retro_ecab_699, retro_ecab_708, retro_ecab_843, retro_ecab_895, retro_ecab_967, retro_ecab_973,
Echinops telfairi	ENSETEG00000006941	7 retrocopies	retro_etel_1508, retro_etel_1714, retro_etel_318, retro_etel_345, retro_etel_750, retro_etel_919, retro_etel_983,
Felis catus	ENSFCAG00000010302	31 retrocopies	retro_fcat_1078, retro_fcat_1115, retro_fcat_1118, retro_fcat_1149, retro_fcat_1206, retro_fcat_1276, retro_fcat_1288, retro_fcat_1298, retro_fcat_1376, retro_fcat_1482, retro_fcat_1527, retro_fcat_1637, retro_fcat_1638, retro_fcat_1676, retro_fcat_1854, retro_fcat_1873, retro_fcat_1977, retro_fcat_2009, retro_fcat_302, retro_fcat_35,