RetrogeneDB ID: retro_mputfur_60

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897009.1:978788..979331(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000018427
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000018146
• Aliases: None
• Description: Mitochondrial ribosomal protein L32 [Source:UniProtKB/TrEMBL;Acc:G9KBB8]

Sequence

>retro_mputfur_60
ATGGCGTCAACCATGCTGGTGCTCATCTTTCCACCCTGGCCCGCCGCCCAGGGACTCCTCTGGAGCTGTTGGAAACTGCT
ACAGTGGAAACTTCAGCAGACAGGGCCAGGTTTACCCAGTCCTCTGTGGGAAGTGGCATTAGCAGTCCAAGGTCCAGCTG
TATTTACAGAACCAGCAAATGATACCAATGGAAGTAAGGAGATTCCCAGGCTTTCAGATAGTATCTTTTGGATGGCAGCT
CCGAAAAACAGACTCAGCATTGAAGTTAACCGCTGTAGGAGAAGAAACCCTCAGAAAATTATTAAAGTTAAGAACAATAT
TGATGTTTGTCCTGAATGTGGTCACCTGAAATTGAAACACATCCTTTGTGGCTATCGCTATGAGAAGGTGTGCAAGGAGA
CTGCAGAAATCAGAAGACAGATGGGGAAACAAGAAGGGGCCCCTTTTAAGGCTCCTTCTGTGGAGACTGTGGTGCTGTAC
ACAGGAGAGGTACCATCTGAACAAGATCGTGGTAAGAGAATCAGTGAACGAAACAGGAAGTGA

Alignment

ORF - retro_mputfur_60 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.89 %
• Parental protein coverage: 95.74 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MASTMLVLVFPRWPAARGLLRSCWDLLQRKLQQTGPGLPSPPWGPALAIQGPAVFTEPANDTNGSKEIPS
          MASTMLVL.FP.WPAA.GLL.SCW.LLQ.KLQQTGPGLPSP.W..ALA.QGPAVFTEPANDTNGSKEIP.
Retrocopy MASTMLVLIFPPWPAAQGLLWSCWKLLQWKLQQTGPGLPSPLWEVALAVQGPAVFTEPANDTNGSKEIPR

Parental  LSDSIFWMAAPKNRRSIEVNRCRRRNPQKLIKVKNNIDVCPECGHLKLKHVLCGYCYEKVCKETAEIRRQ
          LSDSIFWMAAPKNR.SIEVNRCRRRNPQK.IKVKNNIDVCPECGHLKLKH.LCGY.YEKVCKETAEIRRQ
Retrocopy LSDSIFWMAAPKNRLSIEVNRCRRRNPQKIIKVKNNIDVCPECGHLKLKHILCGYRYEKVCKETAEIRRQ

Parental  MGKQEGGPFKAPSVETVVLYAGEVPSEQDLGKRIIERDRK
          MGKQEG.PFKAPSVETVVLY.GEVPSEQD.GKRI.ER.RK
Retrocopy MGKQEGAPFKAPSVETVVLYTGEVPSEQDRGKRISERNRK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_60 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_60 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000018146	1 retrocopy	retro_mputfur_60 ,
Mus musculus	ENSMUSG00000015672	1 retrocopy	retro_mmus_61,
Oryctolagus cuniculus	ENSOCUG00000012098	1 retrocopy	retro_ocun_474,
Otolemur garnettii	ENSOGAG00000016806	2 retrocopies	retro_ogar_1965, retro_ogar_2797,
Rattus norvegicus	ENSRNOG00000015989	1 retrocopy	retro_rnor_460,
Ictidomys tridecemlineatus	ENSSTOG00000013340	1 retrocopy	retro_itri_1122,
Tarsius syrichta	ENSTSYG00000014296	1 retrocopy	retro_tsyr_1710,