RetrogeneDB ID: retro_mputfur_561

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896920.1:578231..578681(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C1orf194
• Ensembl ID: ENSMPUG00000002787
• Aliases: None
• Description: chromosome 1 open reading frame 194 [Source:HGNC Symbol;Acc:32331]

Sequence

>retro_mputfur_561
AGACTTACAGTTTCCAAGAAACTGCCATGTGAGAACCCAGCTCACCTTGCTCAGCAACAGGAACCCTGTAGTTGGCTCAG
CTCAACTCCCACAATCACCTCCATGAGGCGGGATGTTTATTTTTTTGATCCTAAGATATTAAAAGATGACCTTAATTTCC
ACTTAGCAGCCTTGTACAACCACCACACAGGGACATTCAAGAACAAAAGTGAGATAGTCTTACACCAGGAGACTACCCAG
GATACCCATGGAATCATCAAGACCCAATTCCCTGGAGAACTTTTACCCCCTCCTCTACCACCTTCCATCACTTCCCAGTC
TAACATCAGATACTGGATCAACCCTAAGAAGGAGTCTATTCACAGCATTCAGGGATCCATAGTATCCGCTCACACTGCAG
CCACCAGTGGAGGCTACTCCCAAAAGAATGATGATGGCTTCTTCTCAACC

Alignment

ORF - retro_mputfur_561 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.33 %
• Parental protein coverage: 87.72 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KLRASKKLPYKNPAHLAQQQEPWSRLSSTPTITSMRRDVYFFDPEIPKDDLDFRLAALYNHHTGTFKNKS
          .L..SKKLP..NPAHLAQQQEP.S.LSSTPTITSMRRDVYFFDP.I.KDDL.F.LAALYNHHTGTFKNKS
Retrocopy RLTVSKKLPCENPAHLAQQQEPCSWLSSTPTITSMRRDVYFFDPKILKDDLNFHLAALYNHHTGTFKNKS

Parental  EILLHQETTQDTHGIIKTQFPGELLPPPPPPSITSRSNIRYWINPKKESIHSIQGSIVSPHTAATNGGYS
          EI.LHQETTQDTHGIIKTQFPGELLPPP.PPSITS.SNIRYWINPKKESIHSIQGSIVS.HTAAT.GGYS
Retrocopy EIVLHQETTQDTHGIIKTQFPGELLPPPLPPSITSQSNIRYWINPKKESIHSIQGSIVSAHTAATSGGYS

Parental  RKTDGGFFST
          .K.D.GFFST
Retrocopy QKNDDGFFST

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_561 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_561 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000019853	3 retrocopies	retro_cfam_1217, retro_cfam_1651, retro_cfam_1827,
Monodelphis domestica	ENSMODG00000002197	1 retrocopy	retro_mdom_1332,
Mustela putorius furo	ENSMPUG00000002787	3 retrocopies	retro_mputfur_561 , retro_mputfur_568, retro_mputfur_672,