RetrogeneDB ID: retro_mputfur_535

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896918.1:4363846..4364403(-)
• Located in intron of: ENSMPUG00000006422

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000005725
• Aliases: None
• Description: None

Sequence

>retro_mputfur_535
CCAACAGCTCCTGCTTATCCTGGACGACCTGCACCAGGAGCCCACCCTGGGCAACCGAGTGGGCCTGGGGCCTACCCGCC
TCCTGGACAGCCAAGTGCTCCTGGAGCCCAGCCCCCTGCTGGCGCCTTTGGCATCCCTGCTAGACCACTGACTGTACCTT
ATGACCTGCCCTTGCCTGGAGGAGTCATGCCTCGCATCTGATAACAATTCTGGGCACAACGAAGCCCAATGCAAACAGAT
TTGCTTTAGATTTCAAGAGAGGGAATGATGTTGCTTTCCACTTTAACCCACGCTTCAATGAGGACAACAAGAGAGTCATT
GTTTGCAATACAAAGCTGGATAACATCTGGGGAAAGGAAGAAAGACAGGCGACTTTCCCATTCGAAAGTGGTAAACCATT
CAAAATACAAGTGCTGGTTGAATCTGACCACTTCAAGGTTGTGGTCAATGATGCTCACTTGTTGCAGTACAATCATTGGA
TGAAAAATCTCCAGGAAATCAGCAAACTGGGAATTTCTGGTGACATAGATCTCACCAGTGCTTCACATGTTATGATA

Alignment

ORF - retro_mputfur_535 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.65 %
• Parental protein coverage: 64.81 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  PTAPAYPGPPAPGAYPGQPSGPGAYPPPGQPSAPGAQPAAGAFGIPAGPLTVPYDLPLPGGVMPRM-LIT
          PTAPAYPG.PAPGA.PGQPSGPGAYPPPGQPSAPGAQP.AGAFGIPA.PLTVPYDLPLPGGVMPR..LIT
Retrocopy PTAPAYPGRPAPGAHPGQPSGPGAYPPPGQPSAPGAQPPAGAFGIPARPLTVPYDLPLPGGVMPRI<LIT

Parental  ILGTTKPNANRFALDFKRGNDVAFHFNPRFNEDNKRVIVCNTKLDNLWGKEERQATFPFETGKPFKIQVL
          ILGTTKPNANRFALDFKRGNDVAFHFNPRFNEDNKRVIVCNTKLDN.WGKEERQATFPFE.GKPFKIQVL
Retrocopy ILGTTKPNANRFALDFKRGNDVAFHFNPRFNEDNKRVIVCNTKLDNIWGKEERQATFPFESGKPFKIQVL

Parental  VESDHFKVAVNDAHLLQYNHRMKNLQEISKLGISGDIDLTSASHVMI
          VESDHFKV.VNDAHLLQYNH.MKNLQEISKLGISGDIDLTSASHVMI
Retrocopy VESDHFKVVVNDAHLLQYNHWMKNLQEISKLGISGDIDLTSASHVMI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_535 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_535 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000015013	1 retrocopy	retro_cfam_2018,
Mustela putorius furo	ENSMPUG00000005725	2 retrocopies	retro_mputfur_115, retro_mputfur_535 ,
Pteropus vampyrus	ENSPVAG00000016067	1 retrocopy	retro_pvam_103,
Tarsius syrichta	ENSTSYG00000009020	4 retrocopies	retro_tsyr_1233, retro_tsyr_1390, retro_tsyr_1784, retro_tsyr_625,