RetrogeneDB ID: retro_mputfur_530

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896918.1:13520728..13520955(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000002168
• Aliases: None
• Description: None

Sequence

>retro_mputfur_530
GTAACACAGTATGAGAAGGACAAGGATTTTCATGTGTCCAGGGGAAGTGGTGTTGGGAAAGGAGGCAGAGGGGTTATGGT
GAGCAGACGAAGCCAATTTTCCAGAAAAAGGCTGAAACTCCAGAGAAGATTGTGCTGAGGTGAGAATGAGTGGAGCCCAA
GTACAGATCAAAGAGAACACCAGCTATCAAGAGTCGGCATTTTGAACAAGGTGGAGATAACAAAAGG

Alignment

ORF - retro_mputfur_530 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.82 %
• Parental protein coverage: 73.33 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  VTQYKKGKDSLYA-QGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHF
          VTQY.K.KD.....QGK....R.Q.GYG.QTKPIF.KKA.T..KIVLR.E.VEP..RSKR..AIK...HF
Retrocopy VTQYEKDKDFHVS<QGKWCWERRQRGYGEQTKPIFQKKAETPEKIVLR*E*VEPKYRSKRTPAIK-SRHF

Parental  ELGGDKKR
          E.GGD.KR
Retrocopy EQGGDNKR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_530 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_530 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000008503	1 retrocopy	retro_acar_98,
Canis familiaris	ENSCAFG00000017688	1 retrocopy	retro_cfam_154,
Loxodonta africana	ENSLAFG00000017385	1 retrocopy	retro_lafr_114,
Monodelphis domestica	ENSMODG00000025578	2 retrocopies	retro_mdom_1878, retro_mdom_971,
Mustela putorius furo	ENSMPUG00000002168	3 retrocopies	retro_mputfur_269, retro_mputfur_530 , retro_mputfur_94,
Sarcophilus harrisii	ENSSHAG00000013479	1 retrocopy	retro_shar_467,
Tupaia belangeri	ENSTBEG00000015808	1 retrocopy	retro_tbel_52,