RetrogeneDB ID: retro_mputfur_5

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897020.1:860431..861148(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000020126
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000010164
• Aliases: None
• Description: Phosphatidylinositol glycan anchor biosynthesis, class L [Source:UniProtKB/TrEMBL;Acc:G9KGI3]

Sequence

>retro_mputfur_5
GCAGGGGGCTTCCTCTGGGTTTGGGACTCCTGGGAAAGAATGAGAAGTCAGGAGCCGGCTGGCGTCCCGGGAGATGGAAG
TAAGACCCTCCTGGTGATCGCGCACCCCGATGATGAAGCCATGTTCTTTGCTCCCACTTTGCTAGGCTTGGCCCGCCTGA
GGCACCGGCTGTCTTTGCTCTGCTTCTCTGCAGGAAATTACTACAATCAAGGGGAGATGCGTAAGAAAGAACTTTTGCAG
AGCTGTGATGTTTTGGGGATTCCACGTTCCAGTATAATGATTATTGACAACAGGGACTTCCCAGATGACCCAGGTGTGCA
GTGGGACACAGAGCGTGTGGCTGGCACCCTCCTCCAGCACGTGGAAGCAAATGGCATCAACCTGGTGGTGACGTTCGATG
CAGGGGGAGTCAGTGGTCACCGAAATCATGTTGCTCTGTATGCAGCTGTGAGGACCCTCCACTCAGAAGGGAAGTTACCT
AAAGGGTGCTCGGTGCTCACACTTCAGTCAGTGAATGTGTTGTGCAAGTACATCTCCCTTCTGGACCTGCCCTTTTCTCT
GCTTCATACCCGGGATGTCCTCTTCGTGCTCACCAGCAAAGAAGTGGCACAGGCCAAGAGAGCCATGTCCTGCCACCGCA
GCCAGCTGCTCTGGTTCCACCGCCTCTACTTACTCTTCTCCAGATACATGAGGATCAACTCCCTGCACTTCCTCTGA

Alignment

ORF - retro_mputfur_5 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.74 %
• Parental protein coverage: 94.44 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  AWGFLWVWDSWERMRSQEPAGVPGDGSKTLLVIAHPDDEAMFFAPTLLGLARLRHRLSLLCFSAGNYYNQ
          A.GFLWVWDSWERMRSQEPAGVPGDGSKTLLVIAHPDDEAMFFAPTLLGLARLRHRLSLLCFSAGNYYNQ
Retrocopy AGGFLWVWDSWERMRSQEPAGVPGDGSKTLLVIAHPDDEAMFFAPTLLGLARLRHRLSLLCFSAGNYYNQ

Parental  GEMRKKELLQSCDVLGIPRSSIMIIDNRDFPDDPGVQWDTERVAGTLLQHVEANGINLVVTFDAGGVSGH
          GEMRKKELLQSCDVLGIPRSSIMIIDNRDFPDDPGVQWDTERVAGTLLQHVEANGINLVVTFDAGGVSGH
Retrocopy GEMRKKELLQSCDVLGIPRSSIMIIDNRDFPDDPGVQWDTERVAGTLLQHVEANGINLVVTFDAGGVSGH

Parental  RNHVALYAAVRTLHSEGKLPKGCSVLTLQSVNVLRKYISLLDLPFSLLHTRDVLFVLTSKEVAQAKRAMS
          RNHVALYAAVRTLHSEGKLPKGCSVLTLQSVNVL.KYISLLDLPFSLLHTRDVLFVLTSKEVAQAKRAMS
Retrocopy RNHVALYAAVRTLHSEGKLPKGCSVLTLQSVNVLCKYISLLDLPFSLLHTRDVLFVLTSKEVAQAKRAMS

Parental  CHRSQLLWFRRLYLLFSRYMRINSLHFL
          CHRSQLLWF.RLYLLFSRYMRINSLHFL
Retrocopy CHRSQLLWFHRLYLLFSRYMRINSLHFL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_5 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_5 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000010164	1 retrocopy	retro_mputfur_5 ,