RetrogeneDB ID: retro_mputfur_419

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896908.1:1193115..1194479(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000000949
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: CORO1C
• Ensembl ID: ENSMPUG00000003421
• Aliases: None
• Description: coronin, actin binding protein, 1C [Source:HGNC Symbol;Acc:2254]

Sequence

>retro_mputfur_419
ATGAGGCGAGTGATAAGACAGAGCAAGTTTCGGCCTGTATTTGGACAAGCGGTAAAAAACAACCTGTGTTATGATGACAT
CCAGGTTTCTCGAGTGACCTGGGATAGTTCCTTTTGCACTGTCAATCCCAGATTTGTTGCCATTATCATAGAAGCGAGTG
GGGGAGGAGCGTTCCTTGTGCTCCCTTTGCACAAGACTGGTCGAATCGACAAATCCTACCCTACATTATGTGGCCACACA
GGACTGGTGCTCAACATAGACTGGTGCCCACATAACGATCAGGTCATTGCCAATGACTCAGAAGACTGCACGGTGATGGT
GTGGCAGATCCCAGAAAATGGACTTATCCTTTCCCTGACCGGACCTGTGGTGATTTTAGAAGACCACTGGAAGAGAGTTG
GCATCGTGGCCTGGCATCCGACTGCCCACAATGTCCTTCTTAGTGCAGACTGTGATAATGCCATCATCATCTGGAATGTG
GGGACAGGGGAAGTCCTTATAAACTTGGATGATATGCATTCAGATATGATTTACAACATGAGCTGGGACCGGAATGGCGG
TCTGATCTGCACAGCTTCCAAAGACAAGAAAGTGAGAGTAATCGATCCTAGGAGACAAGAGATCGTTGCTGAGAAGGAGA
AAGCACATGAAGGAGCAAGACCCATGAGAGCCATCTTTCTGGCAGACGGGAATGTCTTCACCACTGGTTTCAGCCGCATG
AGTGAGCGGCAGCTGGCTCTCTGGAATCTGAAAAATATGCAGGAACCAATTGCTCTTCAAGAAATGGACACTAGCAATGG
GGTATTGCTGCCCTTCTATGACCCCGACACCAGTATCATTTACTTATGTGGAACCGGTGACGACAGTATCCGCTATTTTG
AGATCACAGATGAATCCCTGTATGTCCACTACCTCAACACATTCAGCAGCAAGGAGCCTCAGAGAGGGATGGGCTACATG
CCCAAGAGGGGACTCGATGTTAACAAATGTGAGATTGCCAGATTCTTCAAACTCATGAGTGGAAGTGTGAGCCTATTATC
ATGACTATTCCCAGGAAGTCTGACCTTTTCCAAGATGACCTGTATCCTGACACAGCAGGGCCTGAAGCAGCACTGGAGGC
AGAGGAGTGGTTGGAGGGGAGAAATGCAGATCCAGTCCTCATCTCCTTAAAGCATGGATACATTCCTGGCAAAAACCGGG
ATCTCAAGGTGGTCAAGAAGAACATTCTGGATAGCAAGCCCACTGCAAATAAGAAGTGCGACCTGATCAGTGTCCCCAAG
AAAACCCCAGACACGGCTAGTGTGCAAAACGAAGCCAAGCTGGATGAGATTTTAAAAGAGATCAAATCTATAAAAGACAC
AGTA

Alignment

ORF - retro_mputfur_419 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.32 %
• Parental protein coverage: 95.99 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MRRVVRQSKFRHVFGQAVKNDQCYDDIRVSRVTWDSSFCAVNPRFVAIIIEASGGGAFLVLPLHKTGRID
          MRRV.RQSKFR.VFGQAVKN..CYDDI.VSRVTWDSSFC.VNPRFVAIIIEASGGGAFLVLPLHKTGRID
Retrocopy MRRVIRQSKFRPVFGQAVKNNLCYDDIQVSRVTWDSSFCTVNPRFVAIIIEASGGGAFLVLPLHKTGRID

Parental  KSYPTVCGHTGPVLDIDWCPHNDQVIASGSEDCTVMVWQIPENGLTLSLTEPVVILEGHSKRVGIVAWHP
          KSYPT.CGHTG.VL.IDWCPHNDQVIA..SEDCTVMVWQIPENGL.LSLT.PVVILE.H.KRVGIVAWHP
Retrocopy KSYPTLCGHTGLVLNIDWCPHNDQVIANDSEDCTVMVWQIPENGLILSLTGPVVILEDHWKRVGIVAWHP

Parental  TARNVLLSAGCDNAIIIWNVGTGEALINLDDMHSDMIYNVSWNRNGSLICTASKDKKVRVIDPRKQEIIA
          TA.NVLLSA.CDNAIIIWNVGTGE.LINLDDMHSDMIYN.SW.RNG.LICTASKDKKVRVIDPR.QEI.A
Retrocopy TAHNVLLSADCDNAIIIWNVGTGEVLINLDDMHSDMIYNMSWDRNGGLICTASKDKKVRVIDPRRQEIVA

Parental  EKEKAHEGARPMRAIFLADGNVFTTGFSRMSERQLALWNPKNMQEPIALHEMDTSNGVLLPFYDPDTSII
          EKEKAHEGARPMRAIFLADGNVFTTGFSRMSERQLALWN.KNMQEPIAL.EMDTSNGVLLPFYDPDTSII
Retrocopy EKEKAHEGARPMRAIFLADGNVFTTGFSRMSERQLALWNLKNMQEPIALQEMDTSNGVLLPFYDPDTSII

Parental  YLCGKGDSSIRYFEITDESPYVHYLNTFSSKEPQRGMGYMPKRGLDVNKCEIARFFKL-HERKCEPIIMT
          YLCG.GD.SIRYFEITDES.YVHYLNTFSSKEPQRGMGYMPKRGLDVNKCEIARFFKL.HE.KCEPIIMT
Retrocopy YLCGTGDDSIRYFEITDESLYVHYLNTFSSKEPQRGMGYMPKRGLDVNKCEIARFFKL<HEWKCEPIIMT

Parental  VPRKSDLFQDDLYPDTAGPEAALEAEEWFEGKNADPVLISLKHGYIPGKNRDLKVVKKNILDSKPTANKK
          .PRKSDLFQDDLYPDTAGPEAALEAEEW.EG.NADPVLISLKHGYIPGKNRDLKVVKKNILDSKPTANKK
Retrocopy IPRKSDLFQDDLYPDTAGPEAALEAEEWLEGRNADPVLISLKHGYIPGKNRDLKVVKKNILDSKPTANKK

Parental  CDLISVAKKTPDTASVQNEAKLDEILKEIKSIKDTI
          CDLISV.KKTPDTASVQNEAKLDEILKEIKSIKDT.
Retrocopy CDLISVPKKTPDTASVQNEAKLDEILKEIKSIKDTV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_419 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_419 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000003421	1 retrocopy	retro_mputfur_419 ,
Mus musculus	ENSMUSG00000004530	1 retrocopy	retro_mmus_1098,