RetrogeneDB ID: retro_mputfur_391

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896906.1:20932800..20933948(-)
• Located in intron of: ENSMPUG00000006359

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FAM178B
• Ensembl ID: ENSMPUG00000011331
• Aliases: None
• Description: family with sequence similarity 178, member B [Source:HGNC Symbol;Acc:28036]

Sequence

>retro_mputfur_391
GTACATCCCAGTGAGACAGTGCTTTTACCCAGGTGTCACCTCCTGCATTGTATCCTGGATTGTTCACACCTGAAGCCACA
TAGCTCCTTGAAGGGGCTGTTCTTCAGATGCCCTGTGGCCCAGCAGCTATCCTTCCCGCACAGTGGCCTCATGACCAACC
TCTACCTGTGCACCCTTGACTGCCTGATGCCTCTGCTCCAGTGGCTCTTCCAGTGGCTGATGTGGCCTCCAGAAACTTGT
TCAGGAGCCTTTGGCTTCCTATGGGATCTTAGTATGGATAGGTTCTTCCATCAGTTTGATGGAGATAAGCACTGGTTGTG
GCCCTCACTGCAAGAGGTCATGGAGGGATTTCACAGACTGGGAGGCCACAATCCTGCTCTGGGACTGCAGGGGCCCTGTC
AGCATGGTGGAAGAGTGTTTAAAAATGACACTAGCCTGAGCTGGAGTGAGCAGCAGAACAGCCCCCTGGAGACTGGCTGA
GACATTAGCCTGAGCTATCTCTATTAAGTTCCTGTCACTGAGTACCCTTGCATAGACAGGGGCCTCCACTGATGGGGACC
TCTTGGGCCAAACTGAGCTTCTGTCCTGAGCTGGTGTGGGAGGCAGGGGGCGGCGGCTCTGCCTGCCACACAAGACCAAT
CTCCAGCAGTTTCTGCTCCTGCTCTTCAAGAACATCCAGGAGTGGCCAGGGAAGCTCCAGCAGCTGTGCTGTACCCTGAG
CAAGGTGTCAGATCACCATTACAACTGCTGGCACTCATGAAGTTCTTCCTGGATGTAACCTTCTGGAGCAGACAGCTGTG
AAGCCAGCTTAGCCTTGTGGTCTTTGCCCAGATCCTGGACTAGCAAGAGACATTCCCTGTCTGGCAAGAGAAGGCCCAGC
TGTCTTTGCTCAGCCAGATCCTAAGCCTCATGAGGCCATAATCCCTCTGGTAGTACCTGGGCTCTGAGACCTTGCCACCT
TACCAGAAGCAAGAGCCAAAGGCCAGTGCTGAGCTAGATCACCTGTGCCACAGCTTCTGATACTGCCTAGGGTGGTGGTC
AGCTGCCAAGACTCCCCATCCCAGACCAGTGGGGAGAACTGCAGCTTGCTATGCATGCAATTGGGCCTCCATATTAGCAC
CCATATCCAGGAGAGCCCCCAGGCCATG

Alignment

ORF - retro_mputfur_391 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.54 %
• Parental protein coverage: 58.87 %
• Number of stop codons detected: 7
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  VHPGEMVFLPRHQPLPCILDHSQLKPRSHLEERFLSCPPAQQLSFLRMGLLSNLYLHTPDCPVALLRWLF
          VHP.E.V.LPR...L.CILD.S.LKP.S.L...F..CP.AQQLSF...GL..NLYL.T.DC...LL.WLF
Retrocopy VHPSETVLLPRCHLLHCILDCSHLKPHSSLKGLFFRCPVAQQLSFPHSGLMTNLYLCTLDCLMPLLQWLF

Parental  QLLTWPPETSSGAFSLLWDLSVDGLFHLSDGDKRWWCPSLQEVMETFHSLGARSPALDPSQPESEWTSGK
          Q.L.WPPET.SGAF..LWDLS.D..FH..DGDK.W..PSLQEVME.FH.LG...PAL....P......G.
Retrocopy QWLMWPPETCSGAFGFLWDLSMDRFFHQFDGDKHWLWPSLQEVMEGFHRLGGHNPALGLQGPCQH--GGR

Parental  VLKNDINLSWSQQQDNPPETALDFSLSYI-CKFLALCALAQPTAYTDGELLGLIELLCRAGL-DVGLRL-
          V.KND..LSWS.QQ..P.ET..D.SLSY...KFL.L..LA...A.TDG.LLG..ELL..AG....G.RL.
Retrocopy VFKNDTSLSWSEQQNSPLETG*DISLSYL>IKFLSLSTLA*TGASTDGDLLGQTELLS*AGVGGRGRRLC

Parental  LP-KTDLQQLLLLLLENIHEWPGQLQPLCCTLSKVSDHHHN-LLALVQFFMDVTSRSRQLRSQLSLLVIA
          LP.KT.LQQ.LLLL..NI.EWPG.LQ.LCCTLSKVSDHH.N.LLAL..FF.DVT..SRQL.SQLSL.V.A
Retrocopy LPHKTNLQQFLLLLFKNIQEWPGKLQQLCCTLSKVSDHHYN<LLALMKFFLDVTFWSRQL*SQLSLVVFA

Parental  QMLDQQETFPLWQEKAQLFLLSQLLSLMRPSSLRQHLGSVTLPPGQEQQPKASAELDHKACYLCHS-LLM
          Q.LD.QETFP.WQEKAQL.LLSQ.LSLMRP.SL...LGS.TLPP.Q.Q.PKASAELDH....LCHS.LL.
Retrocopy QILD*QETFPVWQEKAQLSLLSQILSLMRP*SLW*YLGSETLPPYQKQEPKASAELDH----LCHS<LLI

Parental  LAGVVVSCQDITPDQWGE-LQLLCMQLDRHISTHIRESPQAM
          L..VVVSCQD......GE...LLCMQL..HISTHI.ESPQAM
Retrocopy LPRVVVSCQDSPSQTSGENCSLLCMQLGLHISTHIQESPQAM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_391 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_391 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000019142	1 retrocopy	retro_fcat_1551,
Mustela putorius furo	ENSMPUG00000011331	1 retrocopy	retro_mputfur_391 ,