RetrogeneDB ID: retro_mputfur_271

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896900.1:31670011..31670585(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZNF346
• Ensembl ID: ENSMPUG00000012295
• Aliases: None
• Description: zinc finger protein 346 [Source:HGNC Symbol;Acc:16403]

Sequence

>retro_mputfur_271
GCCAACAAAGCGAATGTCTTCTTAGCAATCATGGAATGGAGGTGTTAAAGGGGGAAACAAAGAAGCTATATGCAGATCAG
AAGACCTGCAGAAGCAAAGACAAGAACCAGTGCTGCCCCATTTGTAGCATGACCTTTTCATCCACTGTTGTGGCCCAGGG
GGAAGATCCATGCAAAGAACTTAAAGCTGAAGCAGCAGTCCATTAGTGTAGAAGGCTTGCACCAGAATAGAGCTGATAGA
CCAAGACAAGTTCTGCAGCTTCTGCCAGGTGACTTTCAAAGACCCTGTCATGGCTCCACAACCTTATGTGGGCAAGAAAC
ACAGGAAATAGGAAATCAAGCTCAAACTCATGGCACACTATGAGCGGCTGGTCGGCCAACTGTCCTGACTCATCAGCTGG
GAAGGGCTACCCCTGCAAGATATATAAAATAGTCCTGAACTCTATAGAATAGTATCAAGTTCATGTCAGTGACTTCAAAC
ACAAGAGCCAGTCACCAAGCCAATGGCATCACATCTGGGCTAGATTCCAATGCAAAAGCAGCCATTTTAGAAAGACTTCA
CCCCCTTGGAAAAC

Alignment

ORF - retro_mputfur_271 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 63.55 %
• Parental protein coverage: 67.01 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 6

Retrocopy - Parental Gene Alignment:

Parental  ANKVKRYLAI-HGMETLKGETKKLDSDQKSSRSKDKNQCCPICNMTFSSPVVAQSHYLGKTHAKNLK-LK
          ANK....LAI.HGME.LKGETKKL..DQK..RSKDKNQCCPIC.MTFSS.VVAQ....G....K.LK.LK
Retrocopy ANKANVFLAI<HGMEVLKGETKKLYADQKTCRSKDKNQCCPICSMTFSSTVVAQ----GEDPCKELK>LK

Parental  QQSTKVEALHQNREMIDPDKFCSLCHATFNDP-VMAQQHYVGKKHRKQETKLKLMAHYGRLAD-PAVTDS
          QQS..VE.LHQNR....P.....L....F..P.VMA.Q.YVGKKHRK.E.KLKLMAHY.RL...P.V...
Retrocopy QQSISVEGLHQNR-ADRPRQVLQLLPGDFQRP>VMAPQPYVGKKHRK*EIKLKLMAHYERLVG<PTVLTH

Parental  SAG-KGYPCKTCKIVLNSIEQYQAHVSGFKHKNQSP-KTMASPLGQIPVQRQPVLKDSATLED
          ..G.KGYPCK..KIVLNSIE.YQ.HVS.FKHK.QSP.K.MAS.LG.IP.Q.QP..KD...LE.
Retrocopy QLG<KGYPCKIYKIVLNSIE*YQVHVSDFKHKSQSP<KPMASHLG*IPMQKQPF*KDFTPLEN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_271 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_271 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000016541	2 retrocopies	retro_cfam_1921, retro_cfam_824,
Felis catus	ENSFCAG00000027865	1 retrocopy	retro_fcat_869,
Mustela putorius furo	ENSMPUG00000012295	1 retrocopy	retro_mputfur_271 ,