RetrogeneDB ID: retro_mputfur_230

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896899.1:15907496..15908255(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RGS7
• Ensembl ID: ENSMPUG00000015695
• Aliases: None
• Description: regulator of G-protein signaling 7 [Source:HGNC Symbol;Acc:10003]

Sequence

>retro_mputfur_230
GGATGTGTAAATACCACTGAAGTGGACATCAAGAAGTCATCCAGAATGAGAAACCCACACAAAACACACAAGTCTGTCTA
TGGTTTACAAAATGACATCAGAAGTCACAGCCCTACCCACACCCCCACACCAGAAACTAAACCTCCAACAGAAGATGAGC
TACAGCAACAGATTAAATACTGGCAAATACAGTTAGATAGACATCGGTTAAAAATGTCAAAAGTTGATGATAGTCTGTTA
AGTTACACGGAACAATACTTAGAATATGACCCATTTCTTGTGCCACCTGACACTTCGAACCCATGGCTATCTGATGATAC
TACTTTCTGGGAACTCGAAGCAAGCAAAGAACCAAGCCAGCAGGGGGTAAAGCGATGGGGTTTTGGCATGGATGAAGCAT
TGAAAGACCCCATTGGGAGAGAACAGTTCCTTAAATTTCTAGAGTCGGAATTCAGTTCAGAAAATTTAAGATTCTGGCTA
GCCATGGAGGACCTGAAGAAAAGGCCTATTCGAGAAGTCCCTTCCCGAGTGTAGGAAATATGGCAAGAATTTCTGGCTCC
CAGAGCCCCCAGCACCATTAACTTGGATTCTAAGAGCTATGACAAAACCACACAGAATGTGAAGGAGCCCGGGTGGTACA
CGTTCGAGGACTCTCAGGAGCACATTTACAAACTGATGAAAAGTGATTCATATCCACGTTTTATAAGATCCAGTGCCTAC
CAAGAGTTTCTACAGGCAAAGAAAAAGGGGAAATCTCTC

Alignment

ORF - retro_mputfur_230 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.68 %
• Parental protein coverage: 56.1 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GCVNTTEVDIKKSSRMRNPHKTRKSVYGLQNDIRSHSPTHTPTPETKPPTEDELQQQIKYWQIQLDRHRL
          GCVNTTEVDIKKSSRMRNPHKT.KSVYGLQNDIRSHSPTHTPTPETKPPTEDELQQQIKYWQIQLDRHRL
Retrocopy GCVNTTEVDIKKSSRMRNPHKTHKSVYGLQNDIRSHSPTHTPTPETKPPTEDELQQQIKYWQIQLDRHRL

Parental  KMSKVADSLLTYTEQYLEYDPFLVPPDPSNPWLSDDTTFWELEASKEPSQQRVKRWGFGMDEALKDPVGR
          KMSKV.DSLL.YTEQYLEYDPFLVPPD.SNPWLSDDTTFWELEASKEPSQQ.VKRWGFGMDEALKDP.GR
Retrocopy KMSKVDDSLLSYTEQYLEYDPFLVPPDTSNPWLSDDTTFWELEASKEPSQQGVKRWGFGMDEALKDPIGR

Parental  EQFLKFLESEFSSENLRFWLAVEDLKKRPIREVPSRVQEIWQEFLAPGAPSAINLDSKSYDKTTQNVKEP
          EQFLKFLESEFSSENLRFWLA.EDLKKRPIREVPSRV.EIWQEFLAP.APS.INLDSKSYDKTTQNVKEP
Retrocopy EQFLKFLESEFSSENLRFWLAMEDLKKRPIREVPSRV*EIWQEFLAPRAPSTINLDSKSYDKTTQNVKEP

Parental  GRYTFEDAQEHIYKLMKSDSYPRFIRSSAYQELLQAKKKGRNI
          G.YTFED.QEHIYKLMKSDSYPRFIRSSAYQE.LQAKKKG...
Retrocopy GWYTFEDSQEHIYKLMKSDSYPRFIRSSAYQEFLQAKKKGKSL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_230 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_230 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000015695	1 retrocopy	retro_mputfur_230 ,