RetrogeneDB ID: retro_mputfur_175

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896985.1:4136299..4137088(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000018363
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000001776
• Aliases: None
• Description: None

Sequence

>retro_mputfur_175
ATGGCGGCGGTCGGTATGGTGGCTGCTCGCCTCCTCCTGCTATTGCTGATGGCAGCAGCAGTCCCCAGCCGGGCCTGGGG
CAGTGGCTGCCGATCCGGAGCCGCTCTGCAGGGGGCCAGAGCAGAAGGTCGAGAGGGTGAGGGCCGTGGCACGGTGGGGC
TGCTGCTGGAGCACTCATTCGAGATCGATGATAGTACCCACTTTCGGAAGCAGGGCTCACTGCTCTGGAACCAGCAGGAT
GGCACTTTGTCCCTGTCACAGCGGCAGCTCAATGAGGAGGAGCGGGGCCGGCTCCTGGATGTGGCGGCCCTGAACGGCTT
ATACCGGGTCCGGGTCCCTCAGCGCTCTGGGGCCCCTGATGGCTCAGAAGCTGGCAGCTATGTCTCCTCTTTCGTCCCTG
CGTGCTCCCTGGTGGAGTTGCATCTCTCGGACCAGCTGACGCTGCACGTGGACGTGGCTGGCAATGTGGTGGGCGTGTCA
GTGGTGACGCACCCCGGAGGCTGCTGGGGTCATGAAGTGGAAGATGTAGACCTGGAACTGTTCAACACGTCTGTGCAGCT
GCAGCCACCGGCCACCACCCCAGGTCCCGAGACCGCGGCCTTCACTGAGCGCCTGGAGATGGAGCAGGCCCAGAAGGCCA
AGAACCCGCAGGAACAGAAGTCCTTCTTTGCCAAATATTGGATGTACATCATTACCGTCGTCCTGTTCCTCATGATGTCA
GGAGCACCAGATGCCGGGGGCCAGGGAGGGGGCGGCGGCGGGGGTGGTGGCGGGGGCAGTGGCCGCTGA

Alignment

ORF - retro_mputfur_175 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.51 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAAVGVVAAHLLLLLLMAAAVPSRARGSGCRTGAALRGAGAEGREGEGCGTVGLLLEHSFEIDDSAHFRK
          MAAVG.VAA.LLLLLLMAAAVPSRA.GSGCR.GAAL.GA.AEGREGEG.GTVGLLLEHSFEIDDS.HFRK
Retrocopy MAAVGMVAARLLLLLLMAAAVPSRAWGSGCRSGAALQGARAEGREGEGRGTVGLLLEHSFEIDDSTHFRK

Parental  RGSLLWNQQDGTLSLSQRQLNEEERGRLRDVAALNGLYRVRVPQRPGAPDGSEAGSYVSSFVPACSLVES
          .GSLLWNQQDGTLSLSQRQLNEEERGRL.DVAALNGLYRVRVPQR.GAPDGSEAGSYVSSFVPACSLVE.
Retrocopy QGSLLWNQQDGTLSLSQRQLNEEERGRLLDVAALNGLYRVRVPQRSGAPDGSEAGSYVSSFVPACSLVEL

Parental  HLSDQLTLHVDVAGNVVGVSVVTHPGGCRGHEVEDVDLELFNTSVQLQPPATAPGPETAAFIERLEMEQA
          HLSDQLTLHVDVAGNVVGVSVVTHPGGC.GHEVEDVDLELFNTSVQLQPPAT.PGPETAAF.ERLEMEQA
Retrocopy HLSDQLTLHVDVAGNVVGVSVVTHPGGCWGHEVEDVDLELFNTSVQLQPPATTPGPETAAFTERLEMEQA

Parental  QKAKNPQEQKSFFAKYWMYIIPVVLFLMMSGAPDTGGQGGGGGGGGGGGSGR
          QKAKNPQEQKSFFAKYWMYII.VVLFLMMSGAPD.GGQGGGGGGGGGGGSGR
Retrocopy QKAKNPQEQKSFFAKYWMYIITVVLFLMMSGAPDAGGQGGGGGGGGGGGSGR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_175 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_175 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000001776	1 retrocopy	retro_mputfur_175 ,
Ictidomys tridecemlineatus	ENSSTOG00000011644	1 retrocopy	retro_itri_628,