RetrogeneDB ID: retro_mputfur_1647

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897741.1:14195..14891(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: EMC2
• Ensembl ID: ENSMPUG00000005915
• Aliases: None
• Description: ER membrane protein complex subunit 2 [Source:HGNC Symbol;Acc:28963]

Sequence

>retro_mputfur_1647
GATGTCACTTGGGAAGAAATGTGAGATAAAATGAGAAAATGGAGAGAAGAAGACTCATGAAACAGTGAGCAAATTGTGGA
AGTTTAGAAGAATTAATTAATGAATATGGATCTAAGCTTGGAGATGATATTCGGGTCATATATGAGCAAGTGATGATTGC
AGCCCTAGACTATAGTTGAGATGACTTGGCATTGTTTTGTCTTCAGGAGTTGAGAAGACAGTTCCCTGGCAGTCACGGAG
TCAAGAGACTAACTGGCATAAGATTTGAAGCCATGGAAAGATATGATGATGCTATACAACCACATGGTAAAATTTTACAA
GAAGATCCAACTAACACTGCTGCAAGAACGCCTGATTGTCATTTGAAAAGCCCAGGGGAAAACTGTTGAGGCCATTTGGG
AACTGAATGAGTATCTGTAACAAATTTCTGGGGGCCAAGAAGCCTGGCTTGAACTTGCAGAACTTTATATCAATGAACAT
GACTATGCTAAGGCAACCTTTTGTTTAGAGGAGCTAATGATGGCTAATCCACACAATCACTTACATTGTCAGCAGTATGC
TGAAGTTAAATATACCCAAGGTGGACTCGAAAACCTCGAACTTTCAAGAAAGTATTTTGCAGAGGCACTGAAACTCAGCA
ACAGAAATATGAGAGCTTTGTGTGGGCTTTTCATGTCAGCAAGTCATATTGCTTCT

Alignment

ORF - retro_mputfur_1647 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.63 %
• Parental protein coverage: 78.45 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  DVTWEEMRDKMRKWREENSRNSEQIVEVG-EELINEYASKLGDDIWIIYEQVMIAALDYGRDDLALFCLQ
          DVTWEEM.DKMRKWREE.S.NSEQIVEV..EELINEY.SKLGDDI..IYEQVMIAALDY..DDLALFCLQ
Retrocopy DVTWEEM*DKMRKWREEDS*NSEQIVEV*<EELINEYGSKLGDDIRVIYEQVMIAALDYS*DDLALFCLQ

Parental  ELRRQFPGSHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRK-IAIRKAQG-KNVEAIRELN
          ELRRQFPGSH.VKRLTG.RFEAMERYDDAIQ....ILQEDPTNTAAR........K..G.K.VEAI.ELN
Retrocopy ELRRQFPGSHGVKRLTGIRFEAMERYDDAIQPHGKILQEDPTNTAARTPD<LSFEKPRG<KTVEAIWELN

Parental  EYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGLENLELSRKYF
          EYL.Q..G.QEAW.ELAELYINEHDYAKA.FCLEELMM.NPHNHL.CQQYAEVKYTQGGLENLELSRKYF
Retrocopy EYL*QISGGQEAWLELAELYINEHDYAKATFCLEELMMANPHNHLHCQQYAEVKYTQGGLENLELSRKYF

Parental  AQALKLNNRNMRALFGLYMSASHIAS
          A.ALKL.NRNMRAL.GL.MSASHIAS
Retrocopy AEALKLSNRNMRALCGLFMSASHIAS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1647 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1647 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000012826	1 retrocopy	retro_amel_600,
Canis familiaris	ENSCAFG00000000713	1 retrocopy	retro_cfam_726,
Choloepus hoffmanni	ENSCHOG00000011271	3 retrocopies	retro_chof_1512, retro_chof_1990, retro_chof_851,
Callithrix jacchus	ENSCJAG00000006437	2 retrocopies	retro_cjac_3295, retro_cjac_3867,
Myotis lucifugus	ENSMLUG00000013258	2 retrocopies	retro_mluc_2369, retro_mluc_2452,
Mustela putorius furo	ENSMPUG00000005915	1 retrocopy	retro_mputfur_1647 ,
Mus musculus	ENSMUSG00000022337	1 retrocopy	retro_mmus_1262,
Oryctolagus cuniculus	ENSOCUG00000002461	1 retrocopy	retro_ocun_1251,
Pongo abelii	ENSPPYG00000018820	1 retrocopy	retro_pabe_1600,