RetrogeneDB ID: retro_mputfur_163

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897094.1:3489003..3490716(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000018464
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000000184
• Aliases: None
• Description: None

Sequence

>retro_mputfur_163
CACAAAAAGCAGCTAGACTCGCTGCGAGAGAGGTTGCAGCGGAGGCGGAAGCAGGACTCCGGGCACTTGGATCTACGAAA
TCCAGAGGCAGCACTGTCTCCCACCTTCCACAGTGACAGCCCGTTGCCTACTGCACCCACTTCTGGTGGCCCTAAGCCCA
GCACAGCTTCAGCAGTTCCTGAGCTAGCTACAGACCCTGAATTAGAGAAGAAATTGCTACACCACCTCTCTGATCTGGCC
TTAACATTGCCCACTGATGCTGTGTCCATCCGTCTTGCCATCTCCACGCCAGATGCCCCTGCCACTCAAGATGGGGTAGA
AAGCCTCCTACAGAAGTTTGCAGCTCAGGAGCTGATTGAGGTAAAACGAGGTCTCTTACAAGATGACGCACATCCCACTC
TTGTGACCTATGCTGATCATTCCAAACTCTCTGCCATGATGGGCGCTGTGGCAGAAAAGAAGGGCCCTGGGGAGGTAACA
GGGACTATCACAGGGCAGAAGCGGCGTGCAGAGCAGAACTCAGCCACAGTAGCTGCCTTTGCTAGCTCTTTGGCCTCTGG
CCTGGCCTCTTCAGCATCAGAAGCAGCCAAGGAGCCAACCAAGAAATCGAGGAAACATGCTGCCTCGGATGTTGATCTGG
AGATAGAGAGCCTTCTGAACCAAGAGTCTACTAAGGAACAACAGAGCAAGAAGGTCAGTCAGGAGATCCTAGAGCTATTA
AACACAACAACAGCCAAGGAACAGTCCATTGTTGAAAAGTTTCGATCACGAGGTCGGGCCCAAGTACAGGAGTTCTGTGA
CTATGGAACCAAGGAGGAGTGCATGAAAGCCAGTGATGCTGACCAGCCCTGCCGCAAGCTGCACTTCAGACGAATTATCA
ATAAACACACTGATGAATCATTAGGTGACTGCTCTTTCCTTAACACATGTTTCCACATGGACACCTGCAAATACGTTCAC
TATGAAATTGATGCTTGCATGGATTCTGAGGCTCCTGGGAGCAAAGACCATACACCTAGCCAAGAGCTTGCTCTTACACA
GAGTGTTGGAGGGGACTCCAATGCAGATCGACTCTTCCCTCCTCAGTGGATCTGTTGTGATATCCGCTACTTGGACGTCA
GTATCTTGGGCAAGTTTGCAGTTGTGATGGCTGACCCACCCTGGGATATTCACATGGAGCTGCCCTATGGGACCCTGACA
GATGATGAGATGCGCAGGCTCAACATACCAGTACTGCAGGATGATGGCTTTCTCTTCCTCTGGGTCACAGGCAGGGCCAT
GGAGTTGGGCAGAGAGAGTCTGAACCTCTGGGGTTACGAACGGGTAGATGAAATTATCTGGGTGAAGACAAATCAACTGC
AGCGCATCATTCGGACAGGCTGTACAGGTCACTGGTTGAACCATGGGAAGGAACACTGCTTGGTTGGTGTCAAAGGAAAT
CCCCAAGGCTTCAACCAAGGTCTGGATTGCAATGTGATCATAGCTGAGGTTCGTTCTACCAGTCATAAACCAGATGAAAT
CTATGGCATGATTGAGAGACTATCCCCTGGCACTCGCAAGATTGAGTTATTTGGACGACCACACAATGTGCAGCCCAACT
GGATCACCCTTGGAAACCAACTGGATGGGATTCACCTATTAGACCCAGATGTGGTTGCCCGGTTCAAGCAAAGGTATCCA
GATGGTATCATCTCTAAGCCTAAAAATCTATAG

Alignment

ORF - retro_mputfur_163 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.08 %
• Parental protein coverage: 98.28 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  HKKQLDSLRERLQRRRKQDSGHLVLDLRNPEAALSPTFRSDSPVPTAPTSGGPKPSTASAVPELATDPEL
          HKKQLDSLRERLQRRRKQDSGHL..DLRNPEAALSPTF.SDSP.PTAPTSGGPKPSTASAVPELATDPEL
Retrocopy HKKQLDSLRERLQRRRKQDSGHL--DLRNPEAALSPTFHSDSPLPTAPTSGGPKPSTASAVPELATDPEL

Parental  EKKLLHHLSDLALTLPTDAVSIRLAISTPDAPATQDGVESLLQKFAAQELIEVKRGLLQDDAHPTLVTYA
          EKKLLHHLSDLALTLPTDAVSIRLAISTPDAPATQDGVESLLQKFAAQELIEVKRGLLQDDAHPTLVTYA
Retrocopy EKKLLHHLSDLALTLPTDAVSIRLAISTPDAPATQDGVESLLQKFAAQELIEVKRGLLQDDAHPTLVTYA

Parental  DHSKLSAMMGAVAEKKGPGEVTGTITGQKRRAEQNSATVAAFASSLASGLASSASEAAKEPTKKSRKHAA
          DHSKLSAMMGAVAEKKGPGEVTGTITGQKRRAEQNSATVAAFASSLASGLASSASEAAKEPTKKSRKHAA
Retrocopy DHSKLSAMMGAVAEKKGPGEVTGTITGQKRRAEQNSATVAAFASSLASGLASSASEAAKEPTKKSRKHAA

Parental  SDVDLEIESLLNQQSTKEQQSKKVSQEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKAS
          SDVDLEIESLLNQ.STKEQQSKKVSQEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKAS
Retrocopy SDVDLEIESLLNQESTKEQQSKKVSQEILELLNTTTAKEQSIVEKFRSRGRAQVQEFCDYGTKEECMKAS

Parental  DADRPCRKLHFRRIINKHTDESLGDCSFLNTCFHMDTCKYVHYEIDACMDSEAPGSKDHTPSQELALTQS
          DAD.PCRKLHFRRIINKHTDESLGDCSFLNTCFHMDTCKYVHYEIDACMDSEAPGSKDHTPSQELALTQS
Retrocopy DADQPCRKLHFRRIINKHTDESLGDCSFLNTCFHMDTCKYVHYEIDACMDSEAPGSKDHTPSQELALTQS

Parental  VGGDSNADRLFPPQWICCDIRYLDVSILGKFAVVMADPPWDIHMELPYGTLTDDEMRRLNIPVLQDDGFL
          VGGDSNADRLFPPQWICCDIRYLDVSILGKFAVVMADPPWDIHMELPYGTLTDDEMRRLNIPVLQDDGFL
Retrocopy VGGDSNADRLFPPQWICCDIRYLDVSILGKFAVVMADPPWDIHMELPYGTLTDDEMRRLNIPVLQDDGFL

Parental  FLWVTGRAMELGRECLNLWGYERVDEIIWVKTNQLQRIIRTGRTGHWLNHGKEHCLVGVKGNPQGFNQGL
          FLWVTGRAMELGRE.LNLWGYERVDEIIWVKTNQLQRIIRTG.TGHWLNHGKEHCLVGVKGNPQGFNQGL
Retrocopy FLWVTGRAMELGRESLNLWGYERVDEIIWVKTNQLQRIIRTGCTGHWLNHGKEHCLVGVKGNPQGFNQGL

Parental  DCDVIVAEVRSTSHKPDEIYGMIERLSPGTRKIELFGRPHNVQPNXITLGNQLDGIHLLDPDVVARFKQR
          DC.VI.AEVRSTSHKPDEIYGMIERLSPGTRKIELFGRPHNVQPN.ITLGNQLDGIHLLDPDVVARFKQR
Retrocopy DCNVIIAEVRSTSHKPDEIYGMIERLSPGTRKIELFGRPHNVQPNWITLGNQLDGIHLLDPDVVARFKQR

Parental  YPDGIISKPKNL
          YPDGIISKPKNL
Retrocopy YPDGIISKPKNL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_163 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_163 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000000184	1 retrocopy	retro_mputfur_163 ,