RetrogeneDB ID: retro_mputfur_1626

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897424.1:3324..4043(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000008844
• Aliases: None
• Description: None

Sequence

>retro_mputfur_1626
TATTGAGAGAAAAAAGAAAAAAAAAATGAAGAATACAATGCATTTCATGAACTGAAGAAGCAGCCGGTCACCAAGGGTAC
AGGGGTGACTCCAGTTTCTCTCCAGGTAAGACTCCCTTTGGCTTGTATTCCCACCAGCCAGTGCTGCTCACAGGGCTTGC
CACTGGGCACTGCAGACAGGAGCACCTTGTGTGGGAGGGGCTCTGCCAAGCATTCCGAGCTCTGGGGAACTAAAATGAAT
GTCGGGTTTTCAGCTGCTACCAAAGATAATGAACATAAGCATTCACTGACCAAGACTCTAGCCAGAAAGCCTCCACATGT
GGCCATATCTGGGAGTACCCCAAAAGGCCAGGCTGTGCTCGGGATAGACAAGATAAAGACCACAATTGGGAGTTCTGCTT
CTGTCGTTACACCATTCAAGCTGACAACTCAGGCAGCACAGACTCCAGTCTCCAGCAAGAAGCCAGTGTTTGATTTCAAA
GCAAGTCTGTCTCGTGCCCTCAACTATGAGCCCCACAAAGGCAAACTGAAACCATGGGGTCAATCTAAAGAAAATAATTC
TCTGAAGGAACATGTAAACAGAGTTAGCTTCCACAAAAAAACTTGCAAACAACCTCCTCTCCAAACTAGGGAGAAACATT
GGAAACAACATGAGCAAAAACAAAGGAGAAGAAAGCAAAAGTTTTAAGAGCTCAAAAATACCTCATTATGGCTGAAGAT

Alignment

ORF - retro_mputfur_1626 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.5 %
• Parental protein coverage: 54.42 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  YIERKKKNFEEHNAFHELKKQPATKGAVVTPVPLRERLPLACTPTSQRRSQGQPLGAAGRSTLCGKGSAK
          Y.E......EE.NAFHELKKQP.TKG..VTPV.L..RLPLAC.PTSQ..SQG.PLG.A.RSTLCG.GSAK
Retrocopy Y*EXXXXXXEEYNAFHELKKQPVTKGTGVTPVSLQVRLPLACIPTSQCCSQGLPLGTADRSTLCGRGSAK

Parental  RSVLSATKMNVRFSAATKDNEHKRSLTKTPARKSPHVTISGSTPKGQAVLGIYKIKTTTGNSASVVTPFK
          .S.L..TKMNV.FSAATKDNEHK.SLTKT.ARK.PHV.ISGSTPKGQAVLGI.KIKTT.G.SASVVTPFK
Retrocopy HSELWGTKMNVGFSAATKDNEHKHSLTKTLARKPPHVAISGSTPKGQAVLGIDKIKTTIGSSASVVTPFK

Parental  LTTQAAQTPVSSKKPVFDLKASLSRPLNYEPHKGKLKPWGQPKENNSLKEHVNRVSFHKKTYKQPPLQTR
          LTTQAAQTPVSSKKPVFD.KASLSR.LNYEPHKGKLKPWGQ.KENNSLKEHVNRVSFHKKT.KQPPLQTR
Retrocopy LTTQAAQTPVSSKKPVFDFKASLSRALNYEPHKGKLKPWGQSKENNSLKEHVNRVSFHKKTCKQPPLQTR

Parental  EEQRKQHEQRR-KEKKAKVLGARRGLIMAED
          E...KQHEQ...KEKKAKVL.A...LIMAED
Retrocopy EKHWKQHEQKQ<KEKKAKVLRAQKYLIMAED

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1626 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1626 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000010774	1 retrocopy	retro_btau_1714,
Canis familiaris	ENSCAFG00000009538	3 retrocopies	retro_cfam_1685, retro_cfam_2137, retro_cfam_578,
Cavia porcellus	ENSCPOG00000012875	1 retrocopy	retro_cpor_993,
Cavia porcellus	ENSCPOG00000020956	1 retrocopy	retro_cpor_258,
Myotis lucifugus	ENSMLUG00000009782	1 retrocopy	retro_mluc_389,
Mustela putorius furo	ENSMPUG00000008844	1 retrocopy	retro_mputfur_1626 ,
Otolemur garnettii	ENSOGAG00000034763	1 retrocopy	retro_ogar_3125,
Tupaia belangeri	ENSTBEG00000014283	1 retrocopy	retro_tbel_4088,