RetrogeneDB ID: retro_mputfur_1616

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897370.1:208097..208555(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FAM162A
• Ensembl ID: ENSMPUG00000004773
• Aliases: None
• Description: family with sequence similarity 162, member A [Source:HGNC Symbol;Acc:17865]

Sequence

>retro_mputfur_1616
GGAGCTTTGTGCGGCCTGCACAGACCGGTGGGAAGTTATTTTAGTTTATATGAAAGAGATGTTTCCTCATCTCTAAGATT
TACCAGAAATCTTGATTTGAAGACAGTAAATGGATTTTGCACCAAACCACAAGAAAGACCAGAAGCTCCACCCTACACTT
AGAGCTGCAGAGTACCATTACACAAACCTACAAGTTGGGAGAGGAAGATCCTGATATCACCAGGTTGCTTCAAAAAGGAA
GATGAGATCCCAGCGGCTATCTTGTTCAAGACGGTTGATGCTGCCAAGAACAAGATTTGGGGGAAGATCAGCTATGTAAT
GACTGCCCTGTGGCAGGACGCATTTTGGTGGTTACTGAGGGCAAGAAGGCTGTCATCAAAGGAAACGAGTCTTTAACAAG
ACTGAACTTGGAGCAGAAAGCTTGCCTGAAAGAGGAAGCAGCCACAAAGGCCAAGACA

Alignment

ORF - retro_mputfur_1616 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.69 %
• Parental protein coverage: 98.71 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  GSLRGLRQAAGSYFRLYESGSSSSLRLTRNSDLKRINGYCAKPQESPKAPAYTYSHRVPLHKPTNWERKI
          G.L.GL....GSYF.LYE...SSSLR.TRN.DLK..NG.C.KPQE.P.AP.YT.S.RVPLHKPT.WERKI
Retrocopy GALCGLHRPVGSYFSLYERDVSSSLRFTRNLDLKTVNGFCTKPQERPEAPPYT*SCRVPLHKPTSWERKI

Parental  LIWSGRFKKEDDIPETISFEMLDAAKNKIRVKVSYAMIALTVAGCIWMVIEGK-KAVKRNESLTSLNLEK
          LI..G.FKKED.IP..I.F...DAAKNKI..K.SY.M.AL......W..........K.NESLT.LNLE.
Retrocopy LISPGCFKKEDEIPAAILFKTVDAAKNKIWGKISYVMTALWQDAFWWLLRARR<AVIKGNESLTRLNLEQ

Parental  KARLREEAALKAKT
          KA.L.EEAA.KAKT
Retrocopy KACLKEEAATKAKT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1616 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1616 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000014316	1 retrocopy	retro_amel_1533,
Monodelphis domestica	ENSMODG00000018300	1 retrocopy	retro_mdom_785,
Mustela putorius furo	ENSMPUG00000004773	1 retrocopy	retro_mputfur_1616 ,
Otolemur garnettii	ENSOGAG00000003194	1 retrocopy	retro_ogar_2064,
Rattus norvegicus	ENSRNOG00000002255	2 retrocopies	retro_rnor_2587, retro_rnor_337,
Tursiops truncatus	ENSTTRG00000013401	1 retrocopy	retro_ttru_791,