RetrogeneDB ID: retro_mputfur_1606

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897348.1:154813..155328(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: AIMP1
• Ensembl ID: ENSMPUG00000008952
• Aliases: None
• Description: aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 [Source:HGNC Symbol;Acc:10648]

Sequence

>retro_mputfur_1606
TCAGTAGCAGGAAGCACTGACTCTAAGCCAGTAGATGTTTCTCGTCTGGATCTTTGAGTTGGTTATATCATCACTGCCAG
AAAACATCCTGATGCAGATTCTTTATATGTAGAAGAAGTAGATGTTGGAGAAACAGCCCCAAGAACAGTTGTCAGTGGTC
TGGTGAATCATGTTCCTCTTGAATAGATGCAAAATTGGATGGTGATTTTACTTTGTAACCTGAAACCTGCAAAAATGAGG
GGGGTAATATCTCAAGCAATGGTGATGTGTCCTAGTTCAACTGAGAAGGTTGAAATCTTGGCATCTCCTAATGGGTCTAT
TCCTGGAGACAGAATTATTTTTGATGCTTTTCCTGGAGTCCTGACAAGGAGCTAAATCCTAGGATGATTTGGGAGGATAT
CTAGCCTGATCTCTTTACTAATGATGTGTGTGTGACTACACGTAAAGGAGCTCCCTTTGAGGGGAAAGAGAAGGGAGTGT
ATAGGGCTCAAACTATGACCAATAGTGGAATAAAA

Alignment

ORF - retro_mputfur_1606 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.78 %
• Parental protein coverage: 54.06 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SVAGSIDSKPVDVSRLDLRVGCIITARKHPDADSLYVEEVDVGETAPRTVVSGLVNHVPLEQMQNRMVIL
          SVAGS.DSKPVDVSRLDL.VG.IITARKHPDADSLYVEEVDVGETAPRTVVSGLVNHVPLE.MQN.MVIL
Retrocopy SVAGSTDSKPVDVSRLDL*VGYIITARKHPDADSLYVEEVDVGETAPRTVVSGLVNHVPLE*MQNWMVIL

Parental  LCNLKPAKMRGVISQAMVMCASSPEKVEILAPPNGSVPGDRIVFDAFPG-EPDKELNPKKKIWEQIQPDL
          LCNLKPAKMRGVISQAMVMC.SS.EKVEILA.PNGS.PGDRI.FDAFPG..PDKELNP...IWE.I.PDL
Retrocopy LCNLKPAKMRGVISQAMVMCPSSTEKVEILASPNGSIPGDRIIFDAFPG<SPDKELNP-RMIWEDI*PDL

Parental  FTNDECVATYKGAPFEVKGKGVCRAQTMTNSGIK
          FTND.CV.T.KGAPFE.K.KGV.RAQTMTNSGIK
Retrocopy FTNDVCVTTRKGAPFEGKEKGVYRAQTMTNSGIK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1606 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1606 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 9 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000000619	2 retrocopies	retro_chof_1176, retro_chof_2050,
Callithrix jacchus	ENSCJAG00000015885	1 retrocopy	retro_cjac_2504,
Dipodomys ordii	ENSDORG00000005018	1 retrocopy	retro_dord_540,
Mustela putorius furo	ENSMPUG00000008952	1 retrocopy	retro_mputfur_1606 ,
Mus musculus	ENSMUSG00000028029	2 retrocopies	retro_mmus_2271, retro_mmus_3334,
Pongo abelii	ENSPPYG00000014981	1 retrocopy	retro_pabe_1780,
Rattus norvegicus	ENSRNOG00000011384	1 retrocopy	retro_rnor_1704,
Ictidomys tridecemlineatus	ENSSTOG00000008178	1 retrocopy	retro_itri_1173,
Tupaia belangeri	ENSTBEG00000004412	1 retrocopy	retro_tbel_4008,