RetrogeneDB ID: retro_mputfur_1547

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897228.1:253816..254161(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FAM96B
• Ensembl ID: ENSMPUG00000005303
• Aliases: None
• Description: family with sequence similarity 96, member B [Source:HGNC Symbol;Acc:24261]

Sequence

>retro_mputfur_1547
CTGATTCGCTCCATCAATGATCTGGAGCATCCACTGACACTGGAAGAATTGAACGTAGTGGAGCAAGTCCGGGTTCAGGT
GAGCAACCCTGAGAGTACGGTGGCTGTGGCCTTCACACCCACCATTCCACACTGCAGCATGGCCACTCTTATCGGCCTGT
CCATCAAAGTCAAGCTTCTTTGATCCCTTCCCCAGCGTTTCAAGATGGATGCGCACACTACACCAGGAACTCATGCCTTG
GAGCATGCAGTGAACAAGCAGCTTGCAGATAAGGAATGGGTAGCAGCTGCTCTAGCGAATACCCACCTGCTGGAGGTTGT
GAACCAGTGCCTGTCAGCCCGCTCC

Alignment

ORF - retro_mputfur_1547 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.04 %
• Parental protein coverage: 68.86 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LIRSINDPEHPLTLEELNVVEQVRVQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRFKMD
          LIRSIND.EHPLTLEELNVVEQVRVQVS.PESTVAVAFTPTIPHCSMATLIGLSIKVKLL.SLPQRFKMD
Retrocopy LIRSINDLEHPLTLEELNVVEQVRVQVSNPESTVAVAFTPTIPHCSMATLIGLSIKVKLL*SLPQRFKMD

Parental  VHITPGTHASEHAVNKQLADKERVAAALENTHLLEVVNQCLSARS
          .H.TPGTHA.EHAVNKQLADKE.VAAAL.NTHLLEVVNQCLSARS
Retrocopy AHTTPGTHALEHAVNKQLADKEWVAAALANTHLLEVVNQCLSARS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1547 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1547 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000017164	1 retrocopy	retro_amel_1340,
Bos taurus	ENSBTAG00000013931	1 retrocopy	retro_btau_609,
Canis familiaris	ENSCAFG00000020394	2 retrocopies	retro_cfam_479, retro_cfam_802,
Felis catus	ENSFCAG00000029216	2 retrocopies	retro_fcat_1464, retro_fcat_697,
Mustela putorius furo	ENSMPUG00000000605	1 retrocopy	retro_mputfur_722,
Mustela putorius furo	ENSMPUG00000005303	2 retrocopies	retro_mputfur_1547 , retro_mputfur_302,
Mus musculus	ENSMUSG00000031879	1 retrocopy	retro_mmus_2927,
Sarcophilus harrisii	ENSSHAG00000004698	1 retrocopy	retro_shar_590,
Tarsius syrichta	ENSTSYG00000005006	2 retrocopies	retro_tsyr_1305, retro_tsyr_149,