RetrogeneDB ID: retro_mputfur_1524

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897207.1:1180230..1180758(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: POLR2E
• Ensembl ID: ENSMPUG00000008953
• Aliases: None
• Description: polymerase (RNA) II (DNA directed) polypeptide E, 25kDa [Source:HGNC Symbol;Acc:9192]

Sequence

>retro_mputfur_1524
CAGACCCTGGAAGAGTTCAAGGTCCAGTTTGGGGACAAGTCGAGTGAGGGGCGGCCACAGCACACAGACCTCATGGAGCT
GGTGGCCCACAAAGATGACCCCACTGACCAGATGTTTGTGTTCTTCCCAGAGGAGCCTAAGGTGGGAATCAAGACCATCA
AGGTGTACTGCCAGTGGATGCAGGAGGAGAACATCAAGCGGACCCTCATCGTGGTACAGCAAGGCATGACCACATCTGCT
AAGCAGTCTCTGGTGGACATGGTCCCCAAGAACGTCCTGGAGCAATTTCTGCAGCAGGAGCTGCTCATCAACTTCACGGA
GCAGGAGCTGGTCCCAGAGTATGTCATCATGACCAAGGAGGAGGTGACAGAGCTCCTGGCCAGGTATAAACTCCAGGAGA
ACCAGCTGCCCAGGATCCAGACCGGAGACCCGGTGGCCCGCTATTTCGAGATAAAGCGAGGGCAGGTGGTGAAGGTGATC
CGGCCCAGCGAGACTGCCGACAGGTACATCACCTACCGGCTGGTGCAG

Alignment

ORF - retro_mputfur_1524 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.07 %
• Parental protein coverage: 83.81 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QTLEEFKAQFGDKPSEGRPRRTDLTVLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALI
          QTLEEFK.QFGDK.SEGRP..TDL..LVAH.DDPTDQMFVFFPEEPKVGIKTIKVYCQ.MQEENI.R.LI
Retrocopy QTLEEFKVQFGDKSSEGRPQHTDLMELVAHKDDPTDQMFVFFPEEPKVGIKTIKVYCQWMQEENIKRTLI

Parental  VVQQGMTPSAKQSLVDMAPKYVLEQFLQQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQ
          VVQQGMT.SAKQSLVDM.PK.VLEQFLQQELLIN.TE.ELVPE.V.MTKEEVTELLARYKL.ENQLPRIQ
Retrocopy VVQQGMTTSAKQSLVDMVPKNVLEQFLQQELLINFTEQELVPEYVIMTKEEVTELLARYKLQENQLPRIQ

Parental  AGDPVARYFGIKRGQVVKVIRPSETAGRYITYRLVQ
          .GDPVARYF.IKRGQVVKVIRPSETA.RYITYRLVQ
Retrocopy TGDPVARYFEIKRGQVVKVIRPSETADRYITYRLVQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1524 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1524 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000099817	1 retrocopy	retro_hsap_822,
Myotis lucifugus	ENSMLUG00000013193	1 retrocopy	retro_mluc_1636,
Monodelphis domestica	ENSMODG00000005494	1 retrocopy	retro_mdom_1725,
Mustela putorius furo	ENSMPUG00000008953	1 retrocopy	retro_mputfur_1524 ,
Nomascus leucogenys	ENSNLEG00000001207	1 retrocopy	retro_nleu_255,
Pongo abelii	ENSPPYG00000009305	1 retrocopy	retro_pabe_733,