RetrogeneDB ID: retro_mputfur_1510

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897190.1:1357691..1358336(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SERPINE2
• Ensembl ID: ENSMPUG00000016691
• Aliases: None
• Description: serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 [Source:HGNC Symbol;Acc:8951]

Sequence

>retro_mputfur_1510
GTTAAAAATGAAGCTGGTGATATGATGGCCAGTCTCCTTTCCCTAGACCATATCAATGATATGTTCATTGAACTGTGTGT
TGTTGATGAGATGTAATTTAAGGTTTAAGAAAATCAAGGTTTCAATCTGAGAATACAAAGAAAGTTCATTTTGGGGAAGT
GATGGGGAATCTTATCAGTGGCAGTAGTAGTCCAGCTCTCTCTGTTCTGCTGGGGATCAAAAGTACCCCAGTGATTTATG
GTACAACTTCATTGAACTACCATATCATGGGGAAAACATCAGTAGTCTGACCATTCTGCCAGTCAAGACCTCACCCTCAT
CCTCAGCCATTACTTCCACATCAGCACCAATACCATAGACAACTGATGTGAGCACCATGGCATCAAGAGTATGCAGCTAA
TTCTGCCCAAGTGCACAGCCATAGCATAAACTGATTTGAAGGAGCCACTGAAAGTTGTTGGTGTTGCCAAGATGCTTGAT
CCATCAAAAGCAAATTCTGCAAAAATAACAAGGTCAGAAAACCTACATGTTTCTTACATCTTGCAAAAAGCAAACCTTCA
AGTCAGCAAAGATGGAACCAAAGCTTCAGCAACAACAACTGGGAATCTAATCACAAGGTCATTACTTCCTTTGTTCATTG
TAGAC

Alignment

ORF - retro_mputfur_1510 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.01 %
• Parental protein coverage: 52.8 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  VKNETRGMIDSLLSPDLIDGALTRLVLVNAVYFK-GLWKSRFQPENTKK-RTFVAADGKSYQ-VPMLAQL
          VKNE...M..SLLS.D.I......L..V....FK.GL.KSRFQ.ENTKK...F...DG.SYQ.V....QL
Retrocopy VKNEAGDMMASLLSLDHINDMFIELCVVDEM*FK<GLRKSRFQSENTKK<SSFWGSDGESYQ<VAVVVQL

Parental  SVFRC-GSTSTPNDLWYNFIELPYHGESISMLIALPTESSTPLSAIIP-HISTKTIDSWMSTMVPKRVQV
          S.F.C.G....P.DLWYNFIELPYHGE.IS.L..LP...S...SAI...HIST.TID........K..Q.
Retrocopy SLF-C>GDQKYPSDLWYNFIELPYHGENISSLTILPVKTSPSSSAITS<HISTNTIDN*CEHHGIKSMQL

Parental  ILPKFTAVAQTDLKEPLKALGITEMFEPLKANFAKITRSENLHVSHILQKAKIEVSEDGTKASAATTAIL
          ILPK.TA.A.TDLKEPLK..G...M..P.KAN.AKITRSENLHVS.ILQKA...VS.DGTKASA.TT..L
Retrocopy ILPKCTAIA*TDLKEPLKVVGVAKMLDPSKANSAKITRSENLHVSYILQKANLQVSKDGTKASATTTGNL

Parental  IARSSPPWFIVD
          I.RS..P.FIVD
Retrocopy ITRSLLPLFIVD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1510 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1510 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Equus caballus	ENSECAG00000016075	1 retrocopy	retro_ecab_139,
Mustela putorius furo	ENSMPUG00000000448	1 retrocopy	retro_mputfur_1037,
Mustela putorius furo	ENSMPUG00000016691	1 retrocopy	retro_mputfur_1510 ,