RetrogeneDB ID: retro_mputfur_1496

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897171.1:1313523..1313937(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CCDC152
• Ensembl ID: ENSMPUG00000014443
• Aliases: None
• Description: coiled-coil domain containing 152 [Source:HGNC Symbol;Acc:34438]

Sequence

>retro_mputfur_1496
AACTATTCATTAAAAGTAATGCAAACAAAGGAGATCTCAATTAAAGAAGAATGTGCTGCTCTTCGTAATATGATAAAAGG
GCTACAACAGACCATTAAATCTCAACATGATTTGAAAAGTGAAAATGAACAACTAAAAAGAAATGTTGATCTTATGAAAG
AAAATTTAAAATCTCATGAACAGGCATATAAGAATACTATTGCCAAACTTATGAGTGAAATGAAAATCAAAGAGGAGGGA
CATAAGATAGAAATAAGGAAACTTCGTCAGGATATGCGGGACAAAATTGAGTCAAAAGAAGAAAAGCATAAAGACCTGAT
AGAGAAAAAGGAGGTAGAAATTTCAGAGTTAAATGCAAAGTTAAGAACTCAAGAGAAGGAGAAACAAAGTGAAATTATCA
AATTACAGTTAGAG

Alignment

ORF - retro_mputfur_1496 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.51 %
• Parental protein coverage: 65.09 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  NYLLKVMQTKEVSIKEECATLHNMIKGLQQTIKSQHDLRGENEQLKRSADFMKENFKSHEQEYKNNIAKL
          NY.LKVMQTKE.SIKEECA.L.NMIKGLQQTIKSQHDL..ENEQLKR..D.MKEN.KSHEQ.YKN.IAKL
Retrocopy NYSLKVMQTKEISIKEECAALRNMIKGLQQTIKSQHDLKSENEQLKRNVDLMKENLKSHEQAYKNTIAKL

Parental  MSEMKIKEEGYKIEIRKLHQDMQEKIESNEKKHKELIEKKEVEISELNAKLRTQETEKQSEIIKLQLE
          MSEMKIKEEG.KIEIRKL.QDM..KIES.E.KHK.LIEKKEVEISELNAKLRTQE.EKQSEIIKLQLE
Retrocopy MSEMKIKEEGHKIEIRKLRQDMRDKIESKEEKHKDLIEKKEVEISELNAKLRTQEKEKQSEIIKLQLE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1496 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1496 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000002761	2 retrocopies	retro_cpor_311, retro_cpor_638,
Mustela putorius furo	ENSMPUG00000014443	1 retrocopy	retro_mputfur_1496 ,
Otolemur garnettii	ENSOGAG00000012867	1 retrocopy	retro_ogar_1605,