RetrogeneDB ID: retro_mputfur_1494

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897170.1:211813..212788(+)
• Located in intron of: ENSMPUG00000012106

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: XBP1
• Ensembl ID: ENSMPUG00000013524
• Aliases: None
• Description: X-box binding protein 1 [Source:HGNC Symbol;Acc:12801]

Sequence

>retro_mputfur_1494
GGCAAGCGGGAGTCCGCCCCAGGCACGCGCCTCACGCGCCTGAGCCCCGAGGAGAAGGCGCTGCGGAGGAAACTGAAAAA
CAGAGTAGCAGCCCAGACTGCCAGAGACCGAAAGAAAGCTCGAATGAGTGAGCTGGAACAGCAAGTGGCAGATTTGGAGG
AAGGGAACCAAAAACTTTTGCTAGAAAATCAACTTTTGCGAGAGAAAACTCATGGCCTGTAGTTGAGAACCAGGAGTTAA
GACAGCGCTTGGGGATGGATGCCCTGGTTACTGAAGAGGAGGTGGAGACCCAGACCAAGGGGAATGGAGCGAGGCCAGTG
GCCGGGTCTGCTGAGTCCGCAGCAGGTGCAGGCCCAGTTGTCACCCCTCCAGAACATCTCCCCATGGATTCTGACAGCGT
TGACTCTTCAGACTCAGAGTCTGATATCCTGTTGGGCATTCTGTTCAACTTGGATCCAGTCATGTTCTTCAGATGTCCTT
CCCCAGAGTCTCCCAGCCTGGAGCAGCATCCAGAAGCCCATCCAGAAGGACCCAGTTCCTTACCAGCCTCCCCTTCTCCG
TCACTGGGGACGTCATCAGCCAAGCTGGAAGCCATTAATGAACTGATTTGTTTTGATTAAGTATACACCAAGCCCCTAGT
CTTAGAGATACCCTCTGAGACAGAGAGCCAAGCTAATGTGGTAGTGGAAATTGAGGAAGCACCTTTCAGCCCCTCAGAGA
AAGATCACCCTGAATTCACTGTCTCAGTGAAGGAAGAACTTGGTAGAAGATGACTTCATTCCAGAGCTGGGCACCTCAGA
TCTTCTTTCATCCAGCCACTGCCTCAAGTCATCTTCCTGTCTACTGGATGCTTACAGTGACTGTGGCTATGAGGGCTCCC
CTTCTCCCTTGAGCGACATGTCCTCTCTGCTTGGTGTAGACCATTCTTGGGAGGACACTTTTGCTAATGAACTCTTTCCT
CAGCTGATTAGTGTC

Alignment

ORF - retro_mputfur_1494 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.9 %
• Parental protein coverage: 94.22 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  GPPQARKRQRLTHLSPEEKALRRKLKNRVAAQTARDRKKARMSELEQQVVDLEEENQKLLLENQLLREKT
          G........RLT.LSPEEKALRRKLKNRVAAQTARDRKKARMSELEQQV.DLEE.NQKLLLENQLLREKT
Retrocopy GKRESAPGTRLTRLSPEEKALRRKLKNRVAAQTARDRKKARMSELEQQVADLEEGNQKLLLENQLLREKT

Parental  HGL-VVENQELRQRLGMDALVTEEEVETQTKGNGARPVAGSAESAAPGAGPVVTPPEHLPMDSDSVDSSD
          HGL.VVENQELRQRLGMDALVTEEEVETQTKGNGARPVAGSAESAA.GAGPVVTPPEHLPMDSDSVDSSD
Retrocopy HGL<VVENQELRQRLGMDALVTEEEVETQTKGNGARPVAGSAESAA-GAGPVVTPPEHLPMDSDSVDSSD

Parental  SESDILLGILFNLDPVMFFRCPSPESPSLEQHPEAHPEGPSSLPASPSPSLGTSSAKLEAINELIRFDHV
          SESDILLGILFNLDPVMFFRCPSPESPSLEQHPEAHPEGPSSLPASPSPSLGTSSAKLEAINELI.FD.V
Retrocopy SESDILLGILFNLDPVMFFRCPSPESPSLEQHPEAHPEGPSSLPASPSPSLGTSSAKLEAINELICFD*V

Parental  YTKPLVLEIPSETESQANVVVKIEEAPFSPSEKDHSEFTVSVKEE-LVEDDFIPELGTSDLLSSSHCLKP
          YTKPLVLEIPSETESQANVVV.IEEAPFSPSEKDH.EFTVSVKEE.LVEDDFIPELGTSDLLSSSHCLK.
Retrocopy YTKPLVLEIPSETESQANVVVEIEEAPFSPSEKDHPEFTVSVKEE>LVEDDFIPELGTSDLLSSSHCLKS

Parental  SSCLLDAYSDCGYEGSPSPLSDMSSLLGVDHSWEETFANELFPQLISV
          SSCLLDAYSDCGYEGSPSPLSDMSSLLGVDHSWE.TFANELFPQLISV
Retrocopy SSCLLDAYSDCGYEGSPSPLSDMSSLLGVDHSWEDTFANELFPQLISV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1494 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1494 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000013524	1 retrocopy	retro_mputfur_1494 ,