RetrogeneDB ID: retro_mputfur_1453

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897142.1:1713807..1714413(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: STX18
• Ensembl ID: ENSMPUG00000007952
• Aliases: None
• Description: syntaxin 18 [Source:HGNC Symbol;Acc:15942]

Sequence

>retro_mputfur_1453
ATTTTGCACACTGGCAAGCTGAGAAGTTATTTCCTGGAACACAGGAAAGATTATATTAATGCTTATGGCCACCTCATGCC
TGAATGTGGAAGGATGACATATGCAGAAAATCAGATAGACCAGGACGCTCAGACATTGGTGAGGATCTAATCAGAGCTAA
TTCAGCAACGAAACACACAAGCCCACAGGAGATAATTTCCAGCAAGCACAGGAGTGCTATTTCGGATTTCACAGAAGGTT
ACTTTAAAACCATATACAAACTTTACTCAGGACAAAGAGTCACCGGATTTAAGCAAGTGGTGATGAGAAAAAATTGGAAC
CAGAACCAAATACAAAGCCAAGAGAATCCACGTCTTCTGAGAAAGTTCACAGAAACCTTCAAAATTCTCTGAAGGAAAAA
CCTGTCCCTGAGGAATATCCAAACAAGACTCTGAGCAAAGCACAACCTGAATCCGGCTCCCGGAGAGACAGCCGAGGGGA
AATGAATTATTCCCAGAAGAAATACAAATGTTTGGAAAAGAAAATTAATGCCTAATCGGTGAAATCAACAGCCTGTTGGA
TGAAGTGGGGCAATTCAAAGGAAAAGAGGTTGAAATTTCCAGACTC

Alignment

ORF - retro_mputfur_1453 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 60.93 %
• Parental protein coverage: 57.38 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  ISHIGKLRDFLLEHRKDYINAYSHVMSEYGRMTDTERDQIDQDAQTFMRTCSEAIQQLRTQAHK-EIYSQ
          I.H.GKLR...LEHRKDYINAY.H.M.E.GRMT..E..QIDQDAQT..R..SE.IQQ..TQAH..EI.S.
Retrocopy ILHTGKLRSYFLEHRKDYINAYGHLMPECGRMTYAE-NQIDQDAQTLVRI*SELIQQRNTQAHR<EIISS

Parental  QVKEHRSAVLDFVEDYLKRVCKLYSEQRAIRVKRVV-DKKRLSKLEPEPNTKARESTSSEK-GSQHPSQE
          ....HRSA..DF.E.Y.K...KLYS.QR....K.VV.D.K...KLEPEPNTK.RESTSSEK..SQ.PS..
Retrocopy K---HRSAISDFTEGYFKTIYKLYSGQRVTGFKQVV<DEK---KLEPEPNTKPRESTSSEK<SSQKPSKF

Parental  SE-EKPATEEYPEKVPAESQPELGTWGEGKGD-DELSPEEIQMFEQENQRLIGEMNSLFDEVRQIEGRVV
          SE.EKP..EEYP.K.....QPE.G......G...EL.PEEIQMF..EN..LIGE.NSL.DEV.Q..G..V
Retrocopy SE>EKPVPEEYPNKTLSKAQPESGSRRDSRGE<NELFPEEIQMFGKEN*CLIGEINSLLDEVGQFKGKEV

Parental  EISRL
          EISRL
Retrocopy EISRL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1453 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1453 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000168818	1 retrocopy	retro_hsap_1741,
Microcebus murinus	ENSMICG00000009557	1 retrocopy	retro_mmur_1372,
Macaca mulatta	ENSMMUG00000020204	1 retrocopy	retro_mmul_1222,
Mustela putorius furo	ENSMPUG00000007952	1 retrocopy	retro_mputfur_1453 ,