RetrogeneDB ID: retro_mputfur_1401

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897113.1:2994049..2994343(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000000713
• Aliases: None
• Description: None

Sequence

>retro_mputfur_1401
ATTGCATCGGTTATGAAAGACAGATACAGGCAGCCAACTCTGCCTCCCTGCAACACCCAATACCTGGGAAATGACATTAG
GCTCCGGAGACAGCATATCCCAAGTTCCCATCTGGTTCCCCAAGGATGACTTCTCTGTGGTCCTTGAGAGGAACATTCAT
TGGCCCTGCGATTCCTCACCAGTGTCACTTTGGAGCACGGATAAATGCTGGAGAAGGTGTCTGGGGAACTATGGATGAGC
ATCTGGGCTCAGGGTGAAAAGATCTCCAAGCCCCAGAACGTCCTAGTTGTTGCA

Alignment

ORF - retro_mputfur_1401 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 54.46 %
• Parental protein coverage: 65.13 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  IAGIMKDSGNQPPALLPRKAQYLRNDVRLLGQHV-QVPVQFPKDFFSVILEKG-SLSAMRFLTAVSMEHP
          IA..MKD...QP..L.P...QYL.ND.RL..QH..QVP..FPKD.FSV.LE......A.RFLT.V..EH.
Retrocopy IASVMKDRYRQP-TLPPCNTQYLGNDIRLRRQHI>QVPIWFPKDDFSVVLERN<HSLALRFLTSVTLEHG

Parental  EMLEKVSRELWMRVWSRDEDITEPQSILAVS
          .MLEKVS.ELWM..W...E.I..PQ..L.V.
Retrocopy *MLEKVSGELWMSIWAQGEKISKPQNVLVVA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1401 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1401 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000007274	1 retrocopy	retro_fcat_807,
Mustela putorius furo	ENSMPUG00000000713	1 retrocopy	retro_mputfur_1401 ,
Mus musculus	ENSMUSG00000029864	1 retrocopy	retro_mmus_1859,
Rattus norvegicus	ENSRNOG00000016484	1 retrocopy	retro_rnor_1598,
Sus scrofa	ENSSSCG00000016466	1 retrocopy	retro_sscr_1071,