RetrogeneDB ID: retro_mputfur_1383

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897106.1:325093..325546(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000008911
• Aliases: None
• Description: None

Sequence

>retro_mputfur_1383
TCAGGAGTCCAGTTGGGGGAAGTATTCTTAGAAACAGAATGGCAGTTGTAGGAGTTGCAGGATGACAGCCACCTGCTGTT
CTAACACGTGCCAATGGGTGGAATGGATAGGATGAAGACAGGAAGCGTTCTCCACTACATAGCGGAGAAACGCCATCTCT
TCTGTGAGGACCTCAAGGGGAGAACCGTCATTGACATGCACATGGAGGGGACACTGGATCTGCTGGAACTGATTATCATT
CATCCTTTCTTGAAACCAGATGACCAACAAAAACAGCTAGTTAAAATGTCCTGGAAGGCTATAATTAGATACAAGTCTGG
GTTTGAAAAGGTTTTAAGGGATCAGGGGAAAAGATTTCTTATTGGTAATCAGCTGAGCCTTATGGACTTGATTCTGCTCC
ATATCATTTTGGCTCTAGAATAGAAAGTTTCTACTACCCTGTCGGCACCTCCA

Alignment

ORF - retro_mputfur_1383 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.58 %
• Parental protein coverage: 75.86 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  AGVEFDEEFLETKEQLQKLQDGNHLLFQQVPMVEIDGMKLVQTRSILHYIADKHHLFGKDLKERTLIDMY
          .GV...E.FLET..QL..LQD..HLLF..VPM...D.MK...T.S.LHYIA.K.HLF..DLK.RT.IDM.
Retrocopy SGVQLGEVFLETEWQL*ELQDDSHLLF*HVPMGGMDRMK---TGSVLHYIAEKRHLFCEDLKGRTVIDMH

Parental  VEGTLDLLELIIMHPFLKPDDQQKEVVNMAQKAIIRYFPVFEKVLRDHGQRFLVGNELSLADVILLQTIL
          .EGTLDLLELII.HPFLKPDDQQK..V.M..KAIIRY...FEKVLRD.G.RFL.GN.LSL.D.ILL..IL
Retrocopy MEGTLDLLELIIIHPFLKPDDQQKQLVKMSWKAIIRYKSGFEKVLRDQGKRFLIGNQLSLMDLILLHIIL

Parental  ALEEKIPNILSAFP
          ALE.K....LSA.P
Retrocopy ALE*KVSTTLSAPP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1383 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1383 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000005658	1 retrocopy	retro_amel_787,
Bos taurus	ENSBTAG00000004288	1 retrocopy	retro_btau_670,
Canis familiaris	ENSCAFG00000024066	1 retrocopy	retro_cfam_1440,
Felis catus	ENSFCAG00000005237	1 retrocopy	retro_fcat_1199,
Monodelphis domestica	ENSMODG00000018810	1 retrocopy	retro_mdom_954,
Mustela putorius furo	ENSMPUG00000008911	1 retrocopy	retro_mputfur_1383 ,
Sorex araneus	ENSSARG00000009989	1 retrocopy	retro_sara_769,