RetrogeneDB ID: retro_mputfur_1365

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897097.1:3147001..3147347(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: Ddt
• Ensembl ID: ENSMPUG00000002935
• Aliases: None
• Description: D-dopachrome tautomerase [Source:MGI Symbol;Acc:MGI:1298381]

Sequence

>retro_mputfur_1365
CCGTCTGTGGAGCTGGACGCGCACTTGGCTGCAGCCCGCGTGCCTGCGGGATTGGAGAAGCGGCTGGGCATGGCCAGTGC
AGCCATCCTGGGCAAACCTGAGGACCGCGTGAACACGACGGTGCCACCGGGTCTGGCCCTGGCTACGTCACTCCACTGTG
CCCAGCGCGCAGCTGCTCATCTCCTCTGTCCGTGTGTGGGCACCGGGGAAGAGAACTGCGGCTCCAGGGTTCGACTCCTC
CGGTTCCTCCCAAGGAGCTGGACCTGGGCCAGGATCGGATCATTACGCGCATTCTCCCAGTGGAGTCATAGTAGCTAGGC
AAAAAGGGACAGTAATGCCTTTTCTG

Alignment

ORF - retro_mputfur_1365 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 55.37 %
• Parental protein coverage: 99.15 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  PFVELDTNLSAGRVPTGLEKRLCAATADILSKPEDRVNVTVRPGLAMA--VNGSTEPCAQLLISSIGVVG
          P.VELD..L.A.RVP.GLEKRL..A.A.IL.KPEDRVN.TV.PGLA.A..........A.LL....G...
Retrocopy PSVELDAHLAAARVPAGLEKRLGMASAAILGKPEDRVNTTVPPGLALATSLHCAQRAAAHLLCPCVG---

Parental  TAEDNRGHSARFFEFL-TKELNLDQDRIIIRFFPVEPWQIGK-KGTVMTFL
          T.E.N.G...R...FL..KEL.L.QDRII.R..PVE....GK.KGTVM.FL
Retrocopy TGEENCGSRVRLLRFL<PKELDLGQDRIITRILPVES**LGK<KGTVMPFL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1365 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1365 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000013811	1 retrocopy	retro_amel_1024,
Callithrix jacchus	ENSCJAG00000009483	1 retrocopy	retro_cjac_2434,
Felis catus	ENSFCAG00000009408	1 retrocopy	retro_fcat_1172,
Macaca mulatta	ENSMMUG00000004552	1 retrocopy	retro_mmul_312,
Mustela putorius furo	ENSMPUG00000002935	1 retrocopy	retro_mputfur_1365 ,