RetrogeneDB ID: retro_mputfur_1356

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897094.1:3035858..3036144(+)
• Located in intron of: ENSMPUG00000000638

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: EFCAB10
• Ensembl ID: ENSMPUG00000018257
• Aliases: None
• Description: EF-hand calcium binding domain 10 [Source:HGNC Symbol;Acc:34531]

Sequence

>retro_mputfur_1356
CCAGAAAAACCAAGACGGTATTTAATATTGGAATGACTGAGAATTACCAAAATAACAGGCATGGCTTTTTCCTCTCTTTA
TGGATCACTCTAACATTTTATCTATGTTTGAGATGATGGACACTTCAAATAAAGGCACCGTATCATTTGTGTAGTACAAG
GAGGCCCTAAAAACCCCAGGTCTGTTGAATGAAGATGAAGTTTTACAAGATGATGGACATGTAATAACTTTGGAAAAATC
CAGATCTGAAGTGAATAAGAGCATTGAGAAAATATGGTCAGCATTT

Alignment

ORF - retro_mputfur_1356 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.59 %
• Parental protein coverage: 61.01 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  PEKPREYLISILERLRIAKVTGVAF-PFFMDHSNIVSMFEMMDTSHKGTISFVQYREGLKTLGLLDEDEV
          PEKPR.YLI..LE.LRI.K.TG.AF.P.FMDHSNI.SMFEMMDTS.KGT.SFV.Y.E.LKT.GLL.EDEV
Retrocopy PEKPRRYLI--LE*LRITKITGMAF>PLFMDHSNILSMFEMMDTSNKGTVSFV*YKEALKTPGLLNEDEV

Parental  LQDDGHVITLEKFRSEVNKRTEKIWSAF
          LQDDGHVITLEK.RSEVNK..EKIWSAF
Retrocopy LQDDGHVITLEKSRSEVNKSIEKIWSAF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1356 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1356 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000018257	1 retrocopy	retro_mputfur_1356 ,
Otolemur garnettii	ENSOGAG00000000454	1 retrocopy	retro_ogar_2480,
Tupaia belangeri	ENSTBEG00000005996	4 retrocopies	retro_tbel_1203, retro_tbel_1564, retro_tbel_377, retro_tbel_378,
Tursiops truncatus	ENSTTRG00000001481	1 retrocopy	retro_ttru_796,