RetrogeneDB ID: retro_mputfur_1341

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897088.1:3528184..3528509(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TMEM216
• Ensembl ID: ENSMPUG00000014169
• Aliases: None
• Description: transmembrane protein 216 [Source:HGNC Symbol;Acc:25018]

Sequence

>retro_mputfur_1341
CAGTTTCCATGGGCACTAAAGATGGTTTCCAGAAGGACATGGCTGGCATTCACCTCCACCACTGGAAATCCTGTTCTTTC
TGAACAGGTGGTACTATGTTACCTGAATCCTGCTGGAACTCTTCATATTTCTGTCGAAAGCTCTCCTGTTACCATATCCA
ACAGCGAATCTAGTCCTAGACATGATGATGTTTCTCCTTTGCCTTGGAGTTGAAGGAGTTCAACTATTTTTTGGTACAAA
GGGAAACCTCTGCCAATAAAAGATGCCCCTTGGCGTTAGCATGGCCTTGACCTTCCCACCTGTCACAGTGGCCTCCGATT
ATCTG

Alignment

ORF - retro_mputfur_1341 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.56 %
• Parental protein coverage: 72.3 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  QFPWGLKMA-PRGKRLSSTP-LEILFFLNGWYYATYFLLELFIFLYKALLLPYPTANLVLDVVMLLLYLG
          QFPW.LKM..P.G....S.P.LEILFFLN.WYY.T..LLELFIFL.KALLLPYPTANLVLD..M.LL.LG
Retrocopy QFPWALKMV>PEGHGWHSPPPLEILFFLNRWYYVT*ILLELFIFLSKALLLPYPTANLVLDMMMFLLCLG

Parental  IEVIRLFFGTKGNLCQRKMPLGISVALTFPSAMMASYYL
          .E...LFFGTKGNLCQ.KMPLG.S.ALTFP....AS.YL
Retrocopy VEGVQLFFGTKGNLCQ*KMPLGVSMALTFPPVTVASDYL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1341 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1341 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000016592	1 retrocopy	retro_amel_1255,
Bos taurus	ENSBTAG00000021517	1 retrocopy	retro_btau_1184,
Canis familiaris	ENSCAFG00000016171	4 retrocopies	retro_cfam_1342, retro_cfam_331, retro_cfam_332, retro_cfam_333,
Monodelphis domestica	ENSMODG00000020362	1 retrocopy	retro_mdom_232,
Mustela putorius furo	ENSMPUG00000014169	4 retrocopies	retro_mputfur_1341 , retro_mputfur_1536, retro_mputfur_1537, retro_mputfur_1538,
Oryctolagus cuniculus	ENSOCUG00000001682	1 retrocopy	retro_ocun_799,