RetrogeneDB ID: retro_mputfur_1226

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897046.1:2836869..2837109(+)
• Located in intron of: ENSMPUG00000004088

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ATP6V0E2
• Ensembl ID: ENSMPUG00000007307
• Aliases: None
• Description: ATPase, H+ transporting V0 subunit e2 [Source:HGNC Symbol;Acc:21723]

Sequence

>retro_mputfur_1226
ATGGTGTATAATGGCCTCACTGTGCCTCTTATCGTGATGAGCGTGTTCTGGGGCTTCGTCGGCTTCTGCGTGCCCTGGTT
TATCCCTAAGGGTCCCAACCGGGGAGTTATCACCACCATGCTGGTAACCTGTTCAGTTTGCTGCTCTCTCTTTTGGCTGA
TTGCAATTCTGGCCCAACTCAACCCTCTCTTTGGACCACAGTTGAAAAATGAAACCATCTGGTACCTCAAGTATCAGTGG

Alignment

ORF - retro_mputfur_1226 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65. %
• Parental protein coverage: 98.77 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MTAHSFALPVIIFTTFWGLIGIAGPWFVPKGPNRGVIITMLVATAVCCYLFWLITILAQLNPLFGPQLKN
          M.......P.I....FWG..G...PWF.PKGPNRGVI.TMLV...VCC.LFWLI.ILAQLNPLFGPQLKN
Retrocopy MVYNGLTVPLIVMSVFWGFVGFCVPWFIPKGPNRGVITTMLVTCSVCCSLFWLIAILAQLNPLFGPQLKN

Parental  ETIWYVRFLW
          ETIWY....W
Retrocopy ETIWYLKYQW

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1226 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1226 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Loxodonta africana	ENSLAFG00000006800	3 retrocopies	retro_lafr_314, retro_lafr_503, retro_lafr_638,
Mustela putorius furo	ENSMPUG00000007307	2 retrocopies	retro_mputfur_1226 , retro_mputfur_1441,