RetrogeneDB ID: retro_mputfur_1219

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897045.1:621886..622523(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: VPS4B
• Ensembl ID: ENSMPUG00000016525
• Aliases: None
• Description: vacuolar protein sorting 4 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:10895]

Sequence

>retro_mputfur_1219
CTCCAGAAAGCAATAGATCTTGCTGGCAAAGCAGCTCAGGAAGACAAAGCCGGGAACTATGAGGAAGCGCTTCAACTCTA
CCAACATGCCGTTCAGTATTTTCTTCATGTAGTTAAATATGAAGCGCAGGGCGATAAAGCCAAGCGGAGTATCAGGGCAA
AGTGTACAGAATATCTCGATAGAGCAGAAGAACTAAAGGAGTAGCTGAAAAAGAAAGAGAAAAATCCACAGAAACCAGTG
AAAGAGGGACAGCCGAGTCCAGCTGACGAGAAGGGGAATGACAGTGATGAGGAAGGAGAATCTCATGATCCTGAAAAAAA
GAAACTACAGAATCAACTTCAAGGTGCCATTGTTATAGAGCGACCAAATGTGAGATGGAGTGATGTTGCTGGCCTCGAAG
GAGCCAAAGAGGCACTTAAAGAGGCTGTGACACTGCCTATTAAATTCCCTCATCTTTTTACAGGCAAGAGAACACCTTGG
AGGGGAATTCTGTTATTTGGGCCACCTGGAACAGGAAAGTCCCATTTAGCCAAAGCTGTAGCAACAGAAGCAAACAACTC
AACATTTTTTTTCAATATCTTCCTCTGACCTTGTCTCTAAGTGGCTAGGTGAAAGTGAAAGGCTAGTTATGGACATT

Alignment

ORF - retro_mputfur_1219 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.02 %
• Parental protein coverage: 50.24 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LEKAIDLAGKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLK
          L.KAIDLAGKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAK.SIRAKCTEYLDRAE.LKE.LK
Retrocopy LQKAIDLAGKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKRSIRAKCTEYLDRAEELKE*LK

Parental  KKEKNPQKPVKEGQPSPADEKGNDSDGEGESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALK
          KKEKNPQKPVKEGQPSPADEKGNDSD.EGES.DPEKKKLQNQLQGAIVIERPNV.WSDVAGLEGAKEALK
Retrocopy KKEKNPQKPVKEGQPSPADEKGNDSDEEGESHDPEKKKLQNQLQGAIVIERPNVRWSDVAGLEGAKEALK

Parental  EAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNST-FFSISSSDLVSKWLGESEKLV
          EAV.LPIKFPHLFTGKRTPWRGILLFGPPGTGKS.LAKAVATEANNST....ISSSDLVSKWLGESE.LV
Retrocopy EAVTLPIKFPHLFTGKRTPWRGILLFGPPGTGKSHLAKAVATEANNST>XXXISSSDLVSKWLGESERLV

Parental  KNL
          ...
Retrocopy MDI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1219 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1219 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000016525	1 retrocopy	retro_mputfur_1219 ,
Mus musculus	ENSMUSG00000009907	1 retrocopy	retro_mmus_1250,