RetrogeneDB ID: retro_mputfur_1211

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897043.1:2235262..2236747(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000018679
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: SLC19A3
• Ensembl ID: ENSMPUG00000001374
• Aliases: None
• Description: solute carrier family 19, member 3 [Source:HGNC Symbol;Acc:16266]

Sequence

>retro_mputfur_1211
ATGGATTGTTTCAGAACTTCACCAAGTCATTCCTGGATTTATCCCACAGTGATCCTGTGCTTATTTGGATTTTTCTCCAT
GATGAGACCCTCAGAACCCTTTTTTATACCGTATTTATCTGGACCAGATAAAAACCTGACCAGTTCAGAAATCACAAATG
AGATCATCCCAATTTGGACATACTCTTACCTGGTGCTGCTGCTCCCCGTTTTTGTCCTGACTGACTACGTCCGCTACAAG
CCAGTCATCATCCTGCAAGGAGTCAGCTTCATCATCACGTGGTTGCTGCTCTTGTTCGGCCAGGGAGTGAAGGCCATGCA
GGTGGTGGAGTTCTTCTATGGGATGGTCACCGCCACCGAGGTAGCATACTTTGCCTACATTTACAGCATGGTCAGCCCCG
AGCACTACCAGAAAGTGAGTGGCTACTGCAGGAGCATCACACTGGTGGCCTACACAGTGGCCTCAGTGCTGGCCCAGCTC
CTGGTGTCCCTGGCCAGCCTCTCGTACTTTTACCTCAACGTCATATCCTTGGCTTCCATTTTTGTGGCCTTCATTTTGTC
CCTTTTCCTGCCAATGCCCAAGAAGAGCATGTTTTTCCATGCAAAATCCAGCAAAGGACTACGGAAGCAACGGGACAAAA
ATGAGGCATCAGATGCACCTTACAAAATTAACACACCAGGTGGTGAAGAGAATCCCACTTCAGAAATACCCACCATTTCA
GGGAACCTGGATGGTGGTCCTTTGAGCAGCCCGATGCTGCAAAATGTAGCGTTGAATGTTTTTGTGCAGTGGTTCCAAGA
TCTGAAGGAGTGCTACTCTTCCAAGCGACTATTTTACTGGTCCCTATGGTGGGTCTTCTCCACAGCAGGTTTTAACCAAG
TTTTGAACTATGTTCAAATCCTGTGGGATTACAAGTCACCATCCCAGAGTTCTTTTGTCTATAATGGGGCAGTAGAAGCT
CTTGCAACCTTTGGAGGGGCCGTGGCTGCCTTTGCAATGGGCTACGTGAAAGTCAACTGGGATCTTCTGGGGGAGCTCGC
TCTAGCCATCTTCTCCATCATTAGCGCAGGCTCTCTGTTTCTCATGCATTACACGACCGACATCTGGGCGTGTTATGCTG
GCTATCTGATATTCAAGTCTAGCTATATGCTGCTTATAACCATAGCAGTATTTCAGATCACAGTTGATCTGAGTGTGGAA
CGCTACGCCCTGGTATTTGGAATGAACACCTTCATGGCACTCGTAATTCAGACCATTATGGCAGTGATTGTTGTAGATCA
GAAAGGACTCAACCTGCCAATCAGCATTCAGTTTTTAGTTTATGGGAGTTATTTTGCAGTTATTGCTGCCATTTTTCTAA
TGAGAAGCACATATATCATCTACTCAACCAAATGTCAAAAGCAAGCACAGAGCTCTCCAGCTAGTCAGAATCCAGATGAG
CTCCACCCAGAGGGACCAAGGAATGTCATTACAGGAACAAAGCTC

Alignment

ORF - retro_mputfur_1211 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.34 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MDCFRTSPSHSWIYPTVILCLFGFFSMMRPSEPFLIPYLSGPDKNLTSSEITNEIFPIWTYSYLVLLLPV
          MDCFRTSPSHSWIYPTVILCLFGFFSMMRPSEPF.IPYLSGPDKNLTSSEITNEI.PIWTYSYLVLLLPV
Retrocopy MDCFRTSPSHSWIYPTVILCLFGFFSMMRPSEPFFIPYLSGPDKNLTSSEITNEIIPIWTYSYLVLLLPV

Parental  FILTDYVRYKPVIILQGVSFIITWLLLLFGQGVKAMQVVEFFYGMVTATEVAYYAYIYSVVSPEHYQKVS
          F.LTDYVRYKPVIILQGVSFIITWLLLLFGQGVKAMQVVEFFYGMVTATEVAY.AYIYS.VSPEHYQKVS
Retrocopy FVLTDYVRYKPVIILQGVSFIITWLLLLFGQGVKAMQVVEFFYGMVTATEVAYFAYIYSMVSPEHYQKVS

Parental  GYCRSITLVAYTAASVLAQLLVSLASLSYFYLNVISLASVSVAFVLSLFLPMPKKSMFFHAKSSKEIQKQ
          GYCRSITLVAYT.ASVLAQLLVSLASLSYFYLNVISLAS..VAF.LSLFLPMPKKSMFFHAKSSK...KQ
Retrocopy GYCRSITLVAYTVASVLAQLLVSLASLSYFYLNVISLASIFVAFILSLFLPMPKKSMFFHAKSSKGLRKQ

Parental  PNKNEVSDASYKINTPGGEEKPASEISTISGNLDGGPLSSPMLRNVALNVFVQWFQDLKECYSSKRLFYW
          ..KNE.SDA.YKINTPGGEE.P.SEI.TISGNLDGGPLSSPML.NVALNVFVQWFQDLKECYSSKRLFYW
Retrocopy RDKNEASDAPYKINTPGGEENPTSEIPTISGNLDGGPLSSPMLQNVALNVFVQWFQDLKECYSSKRLFYW

Parental  SLWWAFSTAGFNQVLNYVQILWDYKAPSQSSFVYNGAVEAIATFGGAVAAFAVGYVKVNWDLLGELALAI
          SLWW.FSTAGFNQVLNYVQILWDYK.PSQSSFVYNGAVEA.ATFGGAVAAFA.GYVKVNWDLLGELALAI
Retrocopy SLWWVFSTAGFNQVLNYVQILWDYKSPSQSSFVYNGAVEALATFGGAVAAFAMGYVKVNWDLLGELALAI

Parental  FSIISAGSLFLMHYTTDIWACYAGYLIFKSSYMLLITIAVFQIAVNLSVERYALVFGMNTFMALVIQTIM
          FSIISAGSLFLMHYTTDIWACYAGYLIFKSSYMLLITIAVFQI.V.LSVERYALVFGMNTFMALVIQTIM
Retrocopy FSIISAGSLFLMHYTTDIWACYAGYLIFKSSYMLLITIAVFQITVDLSVERYALVFGMNTFMALVIQTIM

Parental  TVIVVDQKGLNLPISIQFLVYGSYFAVIAAIFLTRSTYIIYSTKCQKQAQSSPASQNPDELHPEGPRNVI
          .VIVVDQKGLNLPISIQFLVYGSYFAVIAAIFL.RSTYIIYSTKCQKQAQSSPASQNPDELHPEGPRNVI
Retrocopy AVIVVDQKGLNLPISIQFLVYGSYFAVIAAIFLMRSTYIIYSTKCQKQAQSSPASQNPDELHPEGPRNVI

Parental  TGTKL
          TGTKL
Retrocopy TGTKL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1211 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1211 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000135917	1 retrocopy	retro_hsap_3732,
Gorilla gorilla	ENSGGOG00000004344	1 retrocopy	retro_ggor_2518,
Monodelphis domestica	ENSMODG00000021220	1 retrocopy	retro_mdom_955,
Mustela putorius furo	ENSMPUG00000001374	1 retrocopy	retro_mputfur_1211 ,
Nomascus leucogenys	ENSNLEG00000013501	1 retrocopy	retro_nleu_2561,
Pongo abelii	ENSPPYG00000013242	1 retrocopy	retro_pabe_3209,
Pan troglodytes	ENSPTRG00000028998	1 retrocopy	retro_ptro_2526,