RetrogeneDB ID: retro_mputfur_120

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897093.1:296371..297421(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000020158
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000016956
• Aliases: None
• Description: None

Sequence

>retro_mputfur_120
GCGGCGGCGACGGCGGCGGAGGCTGTGGCCTCCGGCTCTGGAGAACCCCGAGAAGAGGCCGAAGCTCCGGGCCTCGCCTG
GGATGAGTCCCAGCTGCGTAGTTATAGCTTTCCGACTCGGCCCATCCCCCGTCTGAGTCAGAGCGACCCCCGGGCGGAGG
AGCTTATCGAGAATGAGGAGCCTGTGGTGCTGACAGACACAAATCTTGTGTATCCTGCTCTGAAATGGGACCTCGAATAC
CTGCAGGAGAACATTGGCAACGGAGACTTCTCTGTGTACAGTGCCAGCACCCACAAGTTCTTGTACTATGATGAGAAGAA
GATGGCCAATTTCCAGAACTTTAAGCCCAGGTCCAACAGGGAGGAAATGAAATTTCACGAGTTTGTTGAGAAACTGCAGG
ATATACAGCAGCAAGGAGGGGAAGAGAGGTTGTATCTGCAGCAAACGCTCAATGACACTGTGGGCAGGAAGATCGTCATG
GACTTCTTGGGTTTTAACTGGAACTGGATTAATAAGCAACAGGGAAAGCGTGGCTGGGGACAACTGACATCCAACCTACT
GCTCATTGGCATGGAAGGAAATGTGACACCTGCTCACTATGATGAGCAGCAGAACTTCTTTGCTCAGATAAAAGGCTACA
AGCGATGCATTTTATTCCCTCCGGATCAGTTTGAGTGCCTGTACCCATATCCTGTTCATCACCCATGTGACAGACAGAGC
CAGGTGGACTTTGACAATCCTGACTACGAGAGGTTCCCCAATTTCCAGAACGTGGTTGGTTATGAAACAGTGGTTGGCCC
TGGTGATGTTCTTTACATCCCAATGTACTGGTGGCATCACATAGAGTCATTACTAAATGGGGGGATTACCATCACTGTGA
ACTTCTGGTATAAGGGGGCCCCCACCCCTAAGAGAATTGAATATCCTCTCAAAGCCCATCAGAAAGTGGCCATAATGAGA
AACATTGAGAAGATGCTTGGAGAGGCCTTGGGGAACCCACAAGAGGTGGGGCCCTTGTTGAACACAATGATCAAGGGTCG
ATACAACTAG

Alignment

ORF - retro_mputfur_120 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.67 %
• Parental protein coverage: 65.89 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  AAATAAEAVASGSGEPREEAEAPGLAWDESQLRSYSFPTRPIPRLSQSDPRAEELIENEEPVVLTDTNLV
          AAATAAEAVASGSGEPREEAEAPGLAWDESQLRSYSFPTRPIPRLSQSDPRAEELIENEEPVVLTDTNLV
Retrocopy AAATAAEAVASGSGEPREEAEAPGLAWDESQLRSYSFPTRPIPRLSQSDPRAEELIENEEPVVLTDTNLV

Parental  YPALKWDLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPRSNREEMKFHEFVEKLQDIQQQGG
          YPALKWDLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPRSNREEMKFHEFVEKLQDIQQQGG
Retrocopy YPALKWDLEYLQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPRSNREEMKFHEFVEKLQDIQQQGG

Parental  EERKHRLYLQQTLNDTVGRKIVMDFLGFNWNWINKQQGKRGWGQLTSNLLLIGMEGNVTPAHYDEQQNFF
          EER...LYLQQTLNDTVGRKIVMDFLGFNWNWINKQQGKRGWGQLTSNLLLIGMEGNVTPAHYDEQQNFF
Retrocopy EER---LYLQQTLNDTVGRKIVMDFLGFNWNWINKQQGKRGWGQLTSNLLLIGMEGNVTPAHYDEQQNFF

Parental  AQIKGYKRCILFPPDQ
          AQIKGYKRCILFPPDQ
Retrocopy AQIKGYKRCILFPPDQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_120 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_120 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Mustela putorius furo	ENSMPUG00000016956	1 retrocopy	retro_mputfur_120 ,
Tursiops truncatus	ENSTTRG00000004176	1 retrocopy	retro_ttru_1440,