RetrogeneDB ID: retro_mputfur_1169

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897032.1:4388355..4388971(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RAB7A
• Ensembl ID: ENSMPUG00000017333
• Aliases: None
• Description: RAB7A, member RAS oncogene family [Source:HGNC Symbol;Acc:9788]

Sequence

>retro_mputfur_1169
ATCACCTCTAGGAAGAAAGTGTTGCTGAAGGTTGCCATCCTGGGAGATTCTGGAGTTGGTAAGACATCACTCAAGAACCA
GTATGTAAAAAAGAAATTCAGTAATCAGTACAAAGCTACCACAGGAGCAGACTTTCTGACAAAGGAGGTGATGGTGGATG
ATAGACTAGTTATGAAGCAGATCTGGGACACAGCAGGCCTGGAGCGGCTCTAGCCCCTCAGTGTGGCCTACAGAGGTGCA
GACTGCTGTGTTCTGGAGTGTGACGTTACTGGCCCCAGCACCTTCAAAACTCTCCACAGCTAGAGAGATGAATTCTCATC
CCAACCAGTCCCCGGGATCCCAGAAACTTCCCCTTCATTGTGTTGGGAAACAAGACTGACCTTGAAAACAGACAAGTGGC
CACAAAGTGGCCACAGGCCGGGTGCTACAGCAAAAACAACATTCCCTACGTCAAGACCAGTGCCAAGGAGGCCATCAGTG
TGGAGCTGGCATTCAGACAATCGCACGGAATGCACTCACACAGGAAACAGAGGTAGAGCGGTACAGTGAGTTCCCCGAGC
CCATCAGACTGGACAAGAACAGCCAGGCCATGGCCTCAGTGGAGAGCGGCAGGTGC

Alignment

ORF - retro_mputfur_1169 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.43 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF
          .TSRKKVLLKV.ILGDSGVGKTSL.NQYV.KKFSNQYKAT.GADFLTKEVMVDDRLV..QIWDTAG.ER.
Retrocopy ITSRKKVLLKVAILGDSGVGKTSLKNQYVKKKFSNQYKATTGADFLTKEVMVDDRLVMKQIWDTAGLERL

Parental  QSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEF-LIQASPRDPENFPFVVLGNKIDLENRQVATKRA
          ..L.VA.YRGADCCVL..DVT.P.TFKTL.S.RDEF.LI..SPRDP.NFPF.VLGNK.DLENRQVATK..
Retrocopy *PLSVA-YRGADCCVLECDVTGPSTFKTLHS*RDEF<LIPTSPRDPRNFPFIVLGNKTDLENRQVATKWP

Parental  QAWCYSKNNIPYFETSAKEAINVEQAF-QTIARNALKQETEVELYNEFPEPIKLDKNDRAKASAESCSC
          QA.CYSKNNIPY..TSAKEAI.VE.AF.QTIARNAL.QETEVE.Y.EFPEPI.LDKN..A.AS.ES..C
Retrocopy QAGCYSKNNIPYVKTSAKEAISVELAF<QTIARNALTQETEVERYSEFPEPIRLDKNSQAMASVESGRC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1169 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1169 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 10 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000000365	1 retrocopy	retro_chof_13,
Felis catus	ENSFCAG00000022971	2 retrocopies	retro_fcat_661, retro_fcat_76,
Meleagris gallopavo	ENSMGAG00000007208	1 retrocopy	retro_mgal_7,
Myotis lucifugus	ENSMLUG00000008454	1 retrocopy	retro_mluc_1641,
Mustela putorius furo	ENSMPUG00000017333	1 retrocopy	retro_mputfur_1169 ,
Mus musculus	ENSMUSG00000079477	2 retrocopies	retro_mmus_3339, retro_mmus_3546,
Oryctolagus cuniculus	ENSOCUG00000001645	1 retrocopy	retro_ocun_259,
Pongo abelii	ENSPPYG00000013431	1 retrocopy	retro_pabe_90,
Rattus norvegicus	ENSRNOG00000012247	1 retrocopy	retro_rnor_2779,
Sarcophilus harrisii	ENSSHAG00000016787	1 retrocopy	retro_shar_65,