RetrogeneDB ID: retro_mputfur_1128

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897022.1:2003904..2004208(-)
• Located in intron of: ENSMPUG00000005160

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ENY2
• Ensembl ID: ENSMPUG00000005873
• Aliases: None
• Description: enhancer of yellow 2 homolog (Drosophila) [Source:HGNC Symbol;Acc:24449]

Sequence

>retro_mputfur_1128
ATGGTGGTTAGCAAGATGAACAAAGATGCGCAGATGAGAGCAGCGATTAACCAAAAGTTGATAGAAACCGGAGAAAGAGG
ACGCCTCAAAGAGTTGCTGAGAGCTAAAATTAATTGAATGTGGCTGGAAGGACCAGTTGAAGGCACACTGTAAAGAGGTA
ATTAAAGAAAAAGGACTAGAACACGTTACTGTTGATGACTTGGTGGCTGAAATCACACCAAAAGGCAGAGCCCTGGTACC
TGACAGTGTAAAGAAGGAGCTCCTACAAAGAATAAGAACATTCCTTGCTCAGCATGCCAGCCTT

Alignment

ORF - retro_mputfur_1128 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.04 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MVVSKMNKDAQMRAAINQKLIETGERERLKELLRA-KLIECGWKDQLKAHCKEVIKEKGLEHVTVDDLVA
          MVVSKMNKDAQMRAAINQKLIETGER.RLKELLRA.KLIECGWKDQLKAHCKEVIKEKGLEHVTVDDLVA
Retrocopy MVVSKMNKDAQMRAAINQKLIETGERGRLKELLRA>KLIECGWKDQLKAHCKEVIKEKGLEHVTVDDLVA

Parental  EITPKGRALVPDSVKKELLQRIRTFLAQHASL
          EITPKGRALVPDSVKKELLQRIRTFLAQHASL
Retrocopy EITPKGRALVPDSVKKELLQRIRTFLAQHASL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1128 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1128 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 20 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000003039	1 retrocopy	retro_acar_1,
Bos taurus	ENSBTAG00000007387	1 retrocopy	retro_btau_754,
Dasypus novemcinctus	ENSDNOG00000007377	1 retrocopy	retro_dnov_25,
Echinops telfairi	ENSETEG00000010882	2 retrocopies	retro_etel_1826, retro_etel_450,
Myotis lucifugus	ENSMLUG00000027585	1 retrocopy	retro_mluc_357,
Mustela putorius furo	ENSMPUG00000005873	2 retrocopies	retro_mputfur_1128 , retro_mputfur_323,
Mus musculus	ENSMUSG00000022338	3 retrocopies	retro_mmus_1055, retro_mmus_1795, retro_mmus_3511,
Rattus norvegicus	ENSRNOG00000004681	1 retrocopy	retro_rnor_2193,
Sarcophilus harrisii	ENSSHAG00000001787	4 retrocopies	retro_shar_454, retro_shar_675, retro_shar_815, retro_shar_816,
Tarsius syrichta	ENSTSYG00000005590	1 retrocopy	retro_tsyr_673,
Tursiops truncatus	ENSTTRG00000001742	3 retrocopies	retro_ttru_46, retro_ttru_845, retro_ttru_997,