RetrogeneDB ID: retro_mputfur_112

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896942.1:9521649..9522207(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000018780
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000016854
• Aliases: None
• Description: None

Sequence

>retro_mputfur_112
ATGGCTCCCAGTCTTCCGGAAGGTGCTCAGCTTGGGGAAAGCAAACCCTCGCCCTGCTCCTTTTCCATTGAGAGCATTTT
AGGACTGGACCAGAAGAAAGACTGTGTTCCCTCAATGAAACCCCACAGGCCCTGGGCCGACACCTGCGGCTCCTCAGGAA
AAGATGTTAACCTACGTGTGCATATCCCAAGCCTTCCCAATGGGATATCCTTCCCTTGTACTGTGGATCACCCAGTGCCA
GAAGAAAGATTTCTGAAATACGAAAATTACTTTTCAGGCTCAGAAAGACTTTCGTTGAAAAGAGAGCTGAGTTGGTATCG
AGGCCAGAGACCCAGAACTGCTTTTACTCAAAACCAGATTGAAGTGTTAGAAAATGTCTTTAGAGTTAACTGCTATCCTG
GTATTGACATCAGAGAAGACTTAGCTCGAAAATTGAATCTAGAGGAAGACGGAATCCAGATCTGGTTCCAAAATCGGCGT
GCAAAGCTAAAAAGGTCCCATAGAGAATCACAGTTTCTAATGGCGAAAAAAAATTTCAACACGAATCTCCTGGAATAG

Alignment

ORF - retro_mputfur_112 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.84 %
• Parental protein coverage: 93.91 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAPSLPEGARLGESKPSPCSFSIESILGLDQKKDCVPSMKPHRPWADTCGSSGKDVNLRVHIPSLPNGIS
          MAPSLPEGA.LGESKPSPCSFSIESILGLDQKKDCVPSMKPHRPWADTCGSSGKDVNLRVHIPSLPNGIS
Retrocopy MAPSLPEGAQLGESKPSPCSFSIESILGLDQKKDCVPSMKPHRPWADTCGSSGKDVNLRVHIPSLPNGIS

Parental  FPCTVDHPVPEERFLKYENYFSASERLSLKRELSWYRGRRPRTAFTQNQIEVLENVFRVNCYPGIDIRED
          FPCTVDHPVPEERFLKYENYFS.SERLSLKRELSWYRG.RPRTAFTQNQIEVLENVFRVNCYPGIDIRED
Retrocopy FPCTVDHPVPEERFLKYENYFSGSERLSLKRELSWYRGQRPRTAFTQNQIEVLENVFRVNCYPGIDIRED

Parental  LARKLNLEEDRIQIWFQNRRAKLKRSHRESQFLMAKKNFNTNLLE
          LARKLNLEED.IQIWFQNRRAKLKRSHRESQFLMAKKNFNTNLLE
Retrocopy LARKLNLEEDGIQIWFQNRRAKLKRSHRESQFLMAKKNFNTNLLE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_112 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_112 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000011722	1 retrocopy	retro_amel_862,
Canis familiaris	ENSCAFG00000007995	2 retrocopies	retro_cfam_1907, retro_cfam_954,
Choloepus hoffmanni	ENSCHOG00000013897	1 retrocopy	retro_chof_123,
Callithrix jacchus	ENSCJAG00000010981	1 retrocopy	retro_cjac_891,
Cavia porcellus	ENSCPOG00000012741	1 retrocopy	retro_cpor_1067,
Dasypus novemcinctus	ENSDNOG00000003677	1 retrocopy	retro_dnov_58,
Mustela putorius furo	ENSMPUG00000016854	2 retrocopies	retro_mputfur_112 , retro_mputfur_174,
Tupaia belangeri	ENSTBEG00000017505	1 retrocopy	retro_tbel_339,