RetrogeneDB ID: retro_mputfur_1047

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897001.1:1931195..1931717(-)
• Located in intron of: ENSMPUG00000000382

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CDC123
• Ensembl ID: ENSMPUG00000001047
• Aliases: None
• Description: cell division cycle 123 [Source:HGNC Symbol;Acc:16827]

Sequence

>retro_mputfur_1047
ATCAAGAAGGAACATGTGCTGCACTGTCAGTTCTCTGTGTGGCAGCCGCTGTTCGGAAGCCTTACCATTACGTGTCATTC
TTCCACTCCTCAGAATGTGAAGGGTTATTTACTTGATGATGGAACTCTGGTGGTTTCAGGATGAGAAGATCCGCCAACAA
GTTCTTAGCCAAACAGTGATAATAAGGCAGAAGAAATACAGTGGTCGGATGATGAGAACACAGATACCCTTATGGCACCA
GGATTTCCCAAAGTCACCACTAAAGGTCAAGAAGCTACCAACTCCTGTGTATGGGGGGGGGGTGTATTTCCTAAACTTAA
CTGGAGTGCCCCATGGGATATGTACTGGATAGCAATGAACAGTTCTCTGAAATGTAAAGCCCTCAGTGAAGTCTTTCTAC
TGTTCAAGAGTTCTGATTTCATCACTCACAACTTTATTCAACCATTTTTTCATTGTACTGATGATTCTCCACATCTCTGT
ATAGAATATGAGCTTATTCTTGGAAAATGGTATGAATTGATT

Alignment

ORF - retro_mputfur_1047 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.58 %
• Parental protein coverage: 51.49 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MKKEHVLHCQFSAWYPLF-RSLTIKSVILPL-PQNVKDYLLDDGTLVVSGREDPPTHSQPDSDDEAEEIQ
          .KKEHVLHCQFS.W.PLF...L....VILPL.PQNVK.YLLDDGTLVVSG.EDPPT.S.P.SD..AEEIQ
Retrocopy IKKEHVLHCQFSVWQPLF>EALPLR-VILPL<PQNVKGYLLDDGTLVVSG*EDPPTSS*PNSDNKAEEIQ

Parental  WSDDENTATLTAPEFPEFTTKVQEAINSL--GGSVFPKLNWSAPRDAYWIAMNSSLKCKTLSDIFLLFKS
          WSDDENT.TL.AP.FP..TTK.QEA.NS......VFPKLNWSAP.D.YWIAMNSSLKCK.LS..FLLFKS
Retrocopy WSDDENTDTLMAPGFPKVTTKGQEATNSCVXXXXVFPKLNWSAPWDMYWIAMNSSLKCKALSEVFLLFKS

Parental  SDFITRDFTQPFIHCTDDSPDPCIEYELVLRKWCELI
          SDFIT..F.QPF.HCTDDSP..CIEYEL.L.KW.ELI
Retrocopy SDFITHNFIQPFFHCTDDSPHLCIEYELILGKWYELI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1047 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1047 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000025803	1 retrocopy	retro_fcat_1234,
Myotis lucifugus	ENSMLUG00000010474	1 retrocopy	retro_mluc_1599,
Mustela putorius furo	ENSMPUG00000001047	1 retrocopy	retro_mputfur_1047 ,