RetrogeneDB ID: retro_mputfur_1001

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896991.1:3726087..3726351(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C19orf70
• Ensembl ID: ENSMPUG00000006136
• Aliases: None
• Description: chromosome 19 open reading frame 70 [Source:HGNC Symbol;Acc:33702]

Sequence

>retro_mputfur_1001
CCTAGTGACAAGAGTCGGGCTGTCCTTCAGAATGCCAGGGGGGTCATGGTAGTCTCCCCAGCCATGGACCAGTTCAGCCA
GTATGCATGTGAGCAGATCCGTCTGAAGATACCCCAGCTTCCAGTCCCTCCAAAGCTTAGCTTTCGCATCTGTGAGTCCT
GGAATTCGGGCATCATAATGGTGATGTCAGCTCTGTTGGTGGCTCCCTCGAATGCCCACAAGTACTCCAAGGAGGGCTGG
GAATTCCTGAAGGAGCCAACCAAG

Alignment

ORF - retro_mputfur_1001 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.32 %
• Parental protein coverage: 72.88 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PSEKSQAVLQKAEEV--VPPAMYQFSQYVCEQTGLKMPQLPAPPKFNFHIRDTWNSGIITVMSALSVAPS
          PS.KS.AVLQ.A..V..V.PAM.QFSQY.CEQ..LK.PQLP.PPK..F.I...WNSGII.VMSAL.VAPS
Retrocopy PSDKSRAVLQNARGVMVVSPAMDQFSQYACEQIRLKIPQLPVPPKLSFRICESWNSGIIMVMSALLVAPS

Parental  KACEYSKEGWEYLKERTK
          .A..YSKEGWE.LKE.TK
Retrocopy NAHKYSKEGWEFLKEPTK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1001 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1001 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000018796	2 retrocopies	retro_cfam_1706, retro_cfam_756,
Callithrix jacchus	ENSCJAG00000017076	2 retrocopies	retro_cjac_2329, retro_cjac_735,
Felis catus	ENSFCAG00000011836	1 retrocopy	retro_fcat_287,
Loxodonta africana	ENSLAFG00000026050	1 retrocopy	retro_lafr_1241,
Macaca mulatta	ENSMMUG00000028920	1 retrocopy	retro_mmul_251,
Monodelphis domestica	ENSMODG00000001268	1 retrocopy	retro_mdom_1960,
Mustela putorius furo	ENSMPUG00000006136	2 retrocopies	retro_mputfur_1001 , retro_mputfur_217,
Procavia capensis	ENSPCAG00000006583	1 retrocopy	retro_pcap_106,
Tupaia belangeri	ENSTBEG00000013386	1 retrocopy	retro_tbel_1443,