RetrogeneDB ID: | retro_mmus_217 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
| Coordinates: | 2:90148459..90148888(+) | ||
| Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000091703 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
| Parental gene symbol: | Crxos1 | ||
| Ensembl ID: | ENSMUSG00000074365 | ||
| Aliases: | Crxos, AA606869, AY590891, Crxos1, Egam1 | ||
| Description: | Crx opposite strand transcript 1 [Source:MGI Symbol;Acc:MGI:2451355] |
Retrocopy-Parental alignment summary:
>retro_mmus_217
ATGGAAGAAATCGACGGGATGATAGTTCAAATGCGCTTAAAGGATAGCAAAACTGTATTAATTTCAAAGACGGAGTTGAC
CGATGTGCAGTTCCAGAAGCTAAGAAAGCACTTCGAGACAGACCGTTACCCTAATGAGGAAACTCTGCAGGCCTTCGCTG
AGGAACTCAAACTACAGAAAGACCTCATCAGATCCTGGTTCATCACTCAGCGTGACAGAATGAGGGGGTACAGACGGTTA
TTTATGCGCTACTACAGGGATTGGAAAACGTCCCGTGAGTACTCTACAACAAGAAGTTTCGACAGGCAGAAGAACTCCAA
GGAGTGCTCTCAGAATGACCCTGGACTCCCCGAAGCGTTGGAAGCCTTGAAGAAGCTCAAGCTCTCTTCTGGGTATCAAA
GCAGAGATGGCATGTCACAAGATTTCTGA
ATGGAAGAAATCGACGGGATGATAGTTCAAATGCGCTTAAAGGATAGCAAAACTGTATTAATTTCAAAGACGGAGTTGAC
CGATGTGCAGTTCCAGAAGCTAAGAAAGCACTTCGAGACAGACCGTTACCCTAATGAGGAAACTCTGCAGGCCTTCGCTG
AGGAACTCAAACTACAGAAAGACCTCATCAGATCCTGGTTCATCACTCAGCGTGACAGAATGAGGGGGTACAGACGGTTA
TTTATGCGCTACTACAGGGATTGGAAAACGTCCCGTGAGTACTCTACAACAAGAAGTTTCGACAGGCAGAAGAACTCCAA
GGAGTGCTCTCAGAATGACCCTGGACTCCCCGAAGCGTTGGAAGCCTTGAAGAAGCTCAAGCTCTCTTCTGGGTATCAAA
GCAGAGATGGCATGTCACAAGATTTCTGA
ORF - retro_mmus_217 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 96.48 % |
| Parental protein coverage: | 100. % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MEEIDGMIVQMRLKDSKTVLISKTELTDEQFQKLRKHFETDRCPNEETLQAFAEELKLRKDLIRSWFITQ |
| MEEIDGMIVQMRLKDSKTVLISKTELTD.QFQKLRKHFETDR.PNEETLQAFAEELKL.KDLIRSWFITQ | |
| Retrocopy | MEEIDGMIVQMRLKDSKTVLISKTELTDVQFQKLRKHFETDRYPNEETLQAFAEELKLQKDLIRSWFITQ |
| Parental | RHRMRGYRRLFMRYYRDWKTSREYSTTRSFDRQKNSKECSQNDPGLPEALEALKRLKLSSGYQSRDGMSQ |
| R.RMRGYRRLFMRYYRDWKTSREYSTTRSFDRQKNSKECSQNDPGLPEALEALK.LKLSSGYQSRDGMSQ | |
| Retrocopy | RDRMRGYRRLFMRYYRDWKTSREYSTTRSFDRQKNSKECSQNDPGLPEALEALKKLKLSSGYQSRDGMSQ |
| Parental | DF |
| DF | |
| Retrocopy | DF |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
| SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
| SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
| SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
| SRP007412_liver | 0 .00 RPM | 0 .03 RPM |
| SRP007412_testis | 0 .00 RPM | 0 .05 RPM |
RNA Polymerase II actvity near the 5' end of retro_mmus_217 was not detected
No EST(s) were mapped for retro_mmus_217 retrocopy.
No TSS is located nearby retro_mmus_217 retrocopy 5' end.
retro_mmus_217 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmus_217 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Mus musculus | ENSMUSG00000074365 | 1 retrocopy |
retro_mmus_217 ,
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