RetrogeneDB ID: retro_mmus_172

Retrocopy location

• Organism: Mouse (Mus musculus)
• Coordinates: 5:104517613..104522383(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMUSG00000079065
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: Thoc2
• Ensembl ID: ENSMUSG00000037475
• Aliases: Thoc2, 6330441O12Rik, D130005M13Rik, Gm1139, Gm1793, Tho2
• Description: THO complex 2 [Source:MGI Symbol;Acc:MGI:2442413]

Sequence

>retro_mmus_172
ATGGCGATGACCTCGACAACTGTAGTGGTTCCTGCAGAGTGGATCAAGACCTGGGAAAAATCTGGGAGAGGCGAGTTTTT
GCGTTTGTGCCGGATTCTCAGTGAAAGTAAAAGCCGAGACACTTTTGCTTGGAGAGATTTCCAACAAGCACTCTATGAGT
TGTCATACCATGTCATTAAAGGAACTTTAAAGCCCGAACAGGCCTCAAATGTTCTTAATGACATCAGTGAATTTCGAGAA
GATATTCCATTTATTCTTGCTGATATATTCTGCATATTAGATATTGAGACGAATTGTCTAGAAGAAAAAAGCAAAAGAGA
TCATTTTACACAACTGATATTAGCATGTTTATATTTAGTCTCAGACACAGTTCTAAAGGAACGCTTGGATCCAGAAACAT
TGGGGTCATTGGGCCTTATCAAACAATCGCAGCAGTTCAATCAAAAATCAGTTAAGATCAAAACGAAACTCTTCTATAAA
CAGCAGAAATTCAATTTGCTAAGAGAAGAAAATGAAGGTTATGCCAAGCTGATTGTTGAATTAGGGCAAGATTTATCTGG
AAATATCACTAGTGATTTAATCTTAGAAATTCTCAAATCTTTAATAGGGTGCTTTAATCTAGATCCCAATAGAGTTTTGG
ATATCATTTTAGAAGTGTTTGAATGCAGGCCAGAACACCATGATTTCTTTATATCTTTATTAGAAGCTTATATGAGTATG
TGTGAACCACACACACTGTGTCATATTCTTGGGTTCAAATTCAAGTTTTACCAGGAGCCAAATGGTGAGACCCCATCTTC
CTTGTATAGAGCTGCAGCAGTGCTCCTGCAGTTTAACCTTATCGATTTGGATGATCTCTATGTGCACCTTCTTCCAGCTG
ATAGCTGCATTGTGAGTGAATACAAACGGGAAATTGTGGAAGCTAAGCAAATTGTTAAAAAACTTACAATGGTTGTATTG
CCTTCCGAAAAAAGTGATGAACGAGAAAAAGAAAAGAAAAAAGATGATAAGGTAGAGAAGGCACCTGACAACCAAAAACT
TGGTTTGTTGGAAGCCTTGTTAATTATTGGTGATTGGAAACATGCACAAAGTATTATGGACCATATGCCTCCATACTATG
CAACATCACATAAAGTAATAGCCCTTGCTATTTGCAATCTTATACACATAACTATTGAGCCTATTTACCGAAGAGTTGGT
GTCCCTAAAGGTGCCAAAGGCTCACCTGTCAATGCTTTACAAAACAAGAAGGCACCAAAGCAAGCAGAGAGCTTTGAAGA
CTTAAGGAGAGATGTATTCAGTATGTTCTATTACCTTGGTCCTCACCTTTCTCATGATCCCATCTTATTTGCAAAGGTTG
TGCGCATAGGCAAGTCATTTATGAAGGAATTTCAGTCTGATGGGAAACAAGAAAATAAAGAGAAAATGGAAGCTATTCTT
AGTTGTTTGCTTAGCGTTACTGACCAGGTACTGCTTCCTTCTCTTTCTTTAATGGATTGCAATGCGTGCATGTCTGAGGA
ACTATGGGGAATGTTTAAAACATTTCCTTATCAACATAGATATCGCTTATATGGACAGTGGAAGAATGAGACTTACAACA
GCCATCCACTTTTAGTGAAAGTTAAAGCTTATACAATAGATCGAGCCAAATACATCATGAAGCGCCTAACAAAGGAAAAT
GTGAAGCCTTCAGGAAGACAGATTGGGAAATTGAGCCACAGTAATCCAACCATTTTGTTTGATTATATCTTGTCACAAAT
ACAGAAGTATGATAACTTAATAACCCCTGTGGTAGACTCATTGAAATACCTCACTGCGTTGAATTACGATGTTTTAGCCT
ATTGTATCATTGAAGCACTAGCTAATCCAGAAAAAGAAAGGATGAAACATGATGACACAACCATCTCCAACTGGCTTCAG
AGTCTGGCTAGTTTCTGTGGTGCAGTTTTTCGTAAATACCCAATTGATCTTGCTGGTCTTCTTCAGTATGTAGCCAATCA
GTTAAAGGCAGGCAAAAGTTTTGATCTACTTATATTGAAAGAAGTAGTACAAAAAATGGCAGGAATAGAAGTTACAGAGG
AAATGACAATGGAGCAGCTTGAGGCTATGACAGGTGGGGAACAACTGAAAGCTGAAGGTGGATATTTTGGCCAGATTAGA
AACACTAAAAAATCCTCTCAGAGATTAAAGGATGCACTACTGGACCATGATCTTGCCCTTCCTCTTTGTTTGCTCATGGC
ACAGCAAAGGAATGGGGTGATATTTCAGGAAGGCGGAGAGAAACATTTGAAACTTGTGGGAAAGCTATATGACCAGTGTC
ATGATACCTTGGTACAGTTTGGTGGGTTTTTAGCATCAAATCTAAGCACAGATGATTACATAAAGAGAGTTCCTTCAATT
GATGTGCTTTGTAATGAATTTCATACACCCCATGATGCAGCATTTTTTCTGTCTCGGCCAATGTATGCACACCATATTTC
ATCAAAGTATGATGAACTTAAGAAATCAGAAAAGGGTAGTAAGCAGCAACATAAAGTTCATAAGTACATTATGTCATGTG
AGATGGTGATGGCTCCTGTCCATGAAGCAGTGGTCTCGTTACATATCTCCAAAGTCTGGGACGATATCAGCCCTCAGTTC
TATACCACATTCTGGTCTCTGACCATGTATGACCTTGCAGTGCCACATACCAGCTATGAACGGGAAGTCAATAAACTGAA
GATCCAAATGAAAGCAGTTGATGACAGTCAAGAAATGCCTCTAAATAAAAAGAAAAAGGAGAAAGAGCGCTGCACTGCCT
TGCAGGACAAGCTTCTTGAAGAGGAGAAGAAACAGACGGAGCATGTACAGCGAGTTCTACACAGGCTGAAATTAGAAAAG
GACAACTGGCTCTTAGCAAAATCTACTAAAAATGAGACCATCACAAAATTTCTCCAGTTGTGTATATTTCCTCGATGTAT
TTTTTCAGCAATTGATTCTGTTTACTGTGCTCATTTTGTTGAGTTAGTCCATCAACAGAAGACTCCAAATTTTTCCACAC
TTCTTTGCTATGACCGAGTTTTTTCAGACATAATTTACATGGTTGCTAGCTTTACTGAAAATGAAGCTAGTCGATATGGG
AGATTTCTTTGCTGCATGTTAGAGACTGTGACTAGGTGGCACAGCGACAGATCTACCTATGAGAAGGAATGTGGAAACTA
TCCAGGATTCCTTACTATATTACGAGCAACTGGATTTGATGGTGGAAATAAAGCTGATCAGCTAGATTATGAGAATTTTC
GACATGTTGTACATAAATGGCATTACAAACTAACCAAGGCATCGGTACATTGCCTCGAAACAGGTGAATATACACATATC
AGGAATATCTTGATTGTACTAACAAAAATACTACCATGGTACCCCAAGGTTTTAAATCTGGGTCAGGCTTTGGAAAGAAG
AGTGCATAAAATCTGCCAAGAAGAAAAAGAAAAGAAACCAGATCTATATGCATTAGCAATGGTCTACTCTGGGCAGCTGA
AAAGTAGAAAGTCATACATGATACCTGAAAATGAATTTCATCACAAAGACCCTCCTCCAAGAAATACTGCTACCAATCTA
CAACCAAGTGGGCCTTGTAGTGGGCTGCCTTCATCTATAGGAAGTATGTGTAAATTAGATGAGAGCAGTGCTGAGGAGGC
CGACAAATCACGAGAAAGAGCTCAGTGTGCTGTGAAAGCTGCTAATAAAGCTTCCAGTGTCACACCAAAAGGGAATTTAA
GCAATGGAAACAGTGGCTCTAACAGCAAAGCTGTTAAGGAAAATGACAAAGAAAAGGGCAAAGAGAAAGAGAAAGAAAAA
AAAGAAAAGACCCCAGCTGTTACTCCAGAGGCCAGGGTACTTGGTAAAGACAGTAAAGAAAAACCCAAGGAAGAACAACC
AAATAAAGATGAAAAAATAAGAGAAGCCAAAGAAAGAATGCCTAAATCTGATAAAGACAAGGAAAAATTAAAGAAGGAAG
AAAAAGCTAAAGATGAGAAATTCAGGATCATTGTTGCCAATGTAGAATCAAAATCCACTCAAGAAAGGGAAAAAGAGAAA
GAGCCCTCAAAAGAAAGAGATTTAGCAAAGGAAATGAAGTCAAAAGAGAATGTTAAAGGAGGGGAAAAAGCACCAGTTTC
TGGCTCCTTGAAATCACCTATTTCCCGAACAGATATCACAGAACCTGAAAGAGAAAAACGTCGCAAAGTTGATTCCCATC
CTTCTCCATCACACTCTTCCACAATAAAGGACAGTCTTGTCAAACTTAAGGAATCTTCAGCAAAGCTCTATATCAACCAT
ATTCCACCACTACTGTGCAAGAGTAAAGAGAGAGAAGCAGACAAGAAAGATTTGGACAAGTCAAGGGAAAGATCCAGAGA
AAGAGAGAAAAAAGAGGAAAAGGACAGGAAAGAGCGGAAAAGAGATTATTCAAACAATGACCGAGAGGCACCCTTGGACT
TAATCAAGAGGCGGAAAGATGAAAATGGAATATTGGGGGTTTCAAAACACAAAAGTGAAAGTCCCTGTGAGTCTCTTTAT
CCAAATGAGAAAGACAAGGAAAAAATGAAGTCAAAATCCTCAGGCAAAGAAAAAGGTGATTCATTTAAACCTGAAAAGAT
AGATAAAATATCCAGTGGGAAAAAGGAGTCCGGACATGATAAGGAAAAGATAGAGAAGAAAGAGAAATGGGATGGTTCTG
GAGATAAGGAAGAGAAGAAACATCATAAAACCTCAGACAAGCACAGATAA

Alignment

ORF - retro_mmus_172 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.59 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAAAAVVVPAEWIKNWEKSGRGEFLHLCRILSENKSHDSSTYRDFQQALYELSYHVIKGNLKHEQASSVL
          M....VVVPAEWIK.WEKSGRGEFL.LCRILSE.KS.D....RDFQQALYELSYHVIKG.LK.EQAS.VL
Retrocopy MTSTTVVVPAEWIKTWEKSGRGEFLRLCRILSESKSRDTFAWRDFQQALYELSYHVIKGTLKPEQASNVL

Parental  NDISEFREDMPSILADVFCILDIETNCLEEKSKRDYFTQLVLACLYLVSDTVLKERLDPETLESLGLIKQ
          NDISEFRED.P.ILAD.FCILDIETNCLEEKSKRD.FTQL.LACLYLVSDTVLKERLDPETL.SLGLIKQ
Retrocopy NDISEFREDIPFILADIFCILDIETNCLEEKSKRDHFTQLILACLYLVSDTVLKERLDPETLGSLGLIKQ

Parental  SQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQDLSGNITSDLILENIKSLIGCFNLDPNRV
          SQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLI.ELGQDLSGNITSDLILE..KSLIGCFNLDPNRV
Retrocopy SQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIVELGQDLSGNITSDLILEILKSLIGCFNLDPNRV

Parental  LDVILEVFECRPEHDDFFISLLESYMSMCEPQTLCHILGFKFKFYQEPSGETPSSLYRVAAVLLQFNLID
          LD.ILEVFECRPEH.DFFISLLE.YMSMCEP.TLCHILGFKFKFYQEP.GETPSSLYR.AAVLLQFNLID
Retrocopy LDIILEVFECRPEHHDFFISLLEAYMSMCEPHTLCHILGFKFKFYQEPNGETPSSLYRAAAVLLQFNLID

Parental  LDDLYVHLLPADNCIMDEYKREIVEAKQIVRKLTMVVLSSEKLDERDKEKDKDDEKVEKPPDNQKLGLLE
          LDDLYVHLLPAD.CI..EYKREIVEAKQIV.KLTMVVL.SEK.DER.KEK.KDD.KVEK.PDNQKLGLLE
Retrocopy LDDLYVHLLPADSCIVSEYKREIVEAKQIVKKLTMVVLPSEKSDEREKEKKKDD-KVEKAPDNQKLGLLE

Parental  ALLKVGDWQHAQNIMDQMPPYYAASHKLIALAICKLIHITVEPLYRRVGVPKGAKGSPVSALQNKRAPKQ
          ALL..GDW.HAQ.IMD.MPPYYA.SHK.IALAIC.LIHIT.EP.YRRVGVPKGAKGSPV.ALQNK.APKQ
Retrocopy ALLIIGDWKHAQSIMDHMPPYYATSHKVIALAICNLIHITIEPIYRRVGVPKGAKGSPVNALQNKKAPKQ

Parental  VESFEDLRRDVFNMFCYLGPHLSHDPILFAKVVRIGKSFMKEFQSDGSKQEDKEKTEVILSCLLSITDQV
          .ESFEDLRRDVF.MF.YLGPHLSHDPILFAKVVRIGKSFMKEFQSDG.KQE.KEK.E.ILSCLLS.TDQV
Retrocopy AESFEDLRRDVFSMFYYLGPHLSHDPILFAKVVRIGKSFMKEFQSDG-KQENKEKMEAILSCLLSVTDQV

Parental  LLPSLSLMDCNACMSEELWGMFKTFPYQHRYRLYGQWKNETYNGHPLLVKVKAQTIDRAKYIMKRLTKEN
          LLPSLSLMDCNACMSEELWGMFKTFPYQHRYRLYGQWKNETYN.HPLLVKVKA.TIDRAKYIMKRLTKEN
Retrocopy LLPSLSLMDCNACMSEELWGMFKTFPYQHRYRLYGQWKNETYNSHPLLVKVKAYTIDRAKYIMKRLTKEN

Parental  VKPSGRQIGKLSHSNPTILFDYILSQIQKYDNLITPVVDSLKYLTSLNYDVLAYCIIEALANPEKERMKH
          VKPSGRQIGKLSHSNPTILFDYILSQIQKYDNLITPVVDSLKYLT.LNYDVLAYCIIEALANPEKERMKH
Retrocopy VKPSGRQIGKLSHSNPTILFDYILSQIQKYDNLITPVVDSLKYLTALNYDVLAYCIIEALANPEKERMKH

Parental  DDTTISSWLQSLASFCGAVFRKYPIDLAGLLQYVANQLKAGKSFDLLILKEVVQKMAGIEITEEMTMEQL
          DDTTIS.WLQSLASFCGAVFRKYPIDLAGLLQYVANQLKAGKSFDLLILKEVVQKMAGIE.TEEMTMEQL
Retrocopy DDTTISNWLQSLASFCGAVFRKYPIDLAGLLQYVANQLKAGKSFDLLILKEVVQKMAGIEVTEEMTMEQL

Parental  EAMTGGEQLKAEGGYFGQIRNTKKSSQRLKDALLDHDLALPLCLLMAQQRNGVIFQEGGEKHLKLVGKLY
          EAMTGGEQLKAEGGYFGQIRNTKKSSQRLKDALLDHDLALPLCLLMAQQRNGVIFQEGGEKHLKLVGKLY
Retrocopy EAMTGGEQLKAEGGYFGQIRNTKKSSQRLKDALLDHDLALPLCLLMAQQRNGVIFQEGGEKHLKLVGKLY

Parental  DQCHDTLVQFGGFLASNLSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKSEKGS
          DQCHDTLVQFGGFLASNLST.DYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKSEKGS
Retrocopy DQCHDTLVQFGGFLASNLSTDDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKSEKGS

Parental  KQQHKVHKYITSCEMVMAPVHEAVVSLHVSKVWDDISPQFYATFWSLTMYDLAVPHTSYEREVNKLKVQM
          KQQHKVHKYI.SCEMVMAPVHEAVVSLH.SKVWDDISPQFY.TFWSLTMYDLAVPHTSYEREVNKLK.QM
Retrocopy KQQHKVHKYIMSCEMVMAPVHEAVVSLHISKVWDDISPQFYTTFWSLTMYDLAVPHTSYEREVNKLKIQM

Parental  KAIDDNQEMPPNKKKKEKERCTALQDKLLEEEKKQMEHVQRVLQRLKLEKDNWLLAKSTKNETITKFLQL
          KA.DD.QEMP.NKKKKEKERCTALQDKLLEEEKKQ.EHVQRVL.RLKLEKDNWLLAKSTKNETITKFLQL
Retrocopy KAVDDSQEMPLNKKKKEKERCTALQDKLLEEEKKQTEHVQRVLHRLKLEKDNWLLAKSTKNETITKFLQL

Parental  CIFPRCIFSAIDAVYCARFVELVHQQKTPNFSTLLCYDRVFSDIIYTVASCTENEASRYGRFLCCMLETV
          CIFPRCIFSAID.VYCA.FVELVHQQKTPNFSTLLCYDRVFSDIIY.VAS.TENEASRYGRFLCCMLETV
Retrocopy CIFPRCIFSAIDSVYCAHFVELVHQQKTPNFSTLLCYDRVFSDIIYMVASFTENEASRYGRFLCCMLETV

Parental  TRWHSDRATYEKECGNYPGFLTILRATGFDGGNKADQLDYENFRHVVHKWHYKLTKASVHCLETGEYTHI
          TRWHSDR.TYEKECGNYPGFLTILRATGFDGGNKADQLDYENFRHVVHKWHYKLTKASVHCLETGEYTHI
Retrocopy TRWHSDRSTYEKECGNYPGFLTILRATGFDGGNKADQLDYENFRHVVHKWHYKLTKASVHCLETGEYTHI

Parental  RNILIVLTKILPWYPKVLNLGQALERRVNKICQEEKEKRPDLYALAMGYSGQLKSRKSHMIPENEFHHKD
          RNILIVLTKILPWYPKVLNLGQALERRV.KICQEEKEK.PDLYALAM.YSGQLKSRKS.MIPENEFHHKD
Retrocopy RNILIVLTKILPWYPKVLNLGQALERRVHKICQEEKEKKPDLYALAMVYSGQLKSRKSYMIPENEFHHKD

Parental  PPPRNAVASVQ-NGPGGGTSSSSIGNASKSDESGAEETDKSRERSQCGTKAVNKASSTTPKGNSSNGNSG
          PPPRN.....Q..GP..G...SSIG...K.DES.AEE.DKSRER.QC..KA.NKASS.TPKGN.SNGNSG
Retrocopy PPPRNTATNLQPSGPCSGL-PSSIGSMCKLDESSAEEADKSRERAQCAVKAANKASSVTPKGNLSNGNSG

Parental  SNSNKAVKENDKEKVKEKEKEKKEKTPATTPEARALGKDSKEKPKEERPNKEDKARETKERTPKSDKEKE
          SNS.KAVKENDKEK.KEKEKEKKEKTPA.TPEAR.LGKDSKEKPKEE.PNK..K.RE.KER.PKSDK.KE
Retrocopy SNS-KAVKENDKEKGKEKEKEKKEKTPAVTPEARVLGKDSKEKPKEEQPNKDEKIREAKERMPKSDKDKE

Parental  KFKKEEKAKDEKFKTTVPIVESKSTQEREREKEPSRERDVAKEMKSKENVKGGEKTPVSGSLKSPVPRSD
          K.KKEEKAKDEKF...V..VESKSTQERE.EKEPS.ERD.AKEMKSKENVKGGEK.PVSGSLKSP..R.D
Retrocopy KLKKEEKAKDEKFRIIVANVESKSTQEREKEKEPSKERDLAKEMKSKENVKGGEKAPVSGSLKSPISRTD

Parental  ISEPDREQKRRKIDSHPSPSHSSTVKDSLIDLKDSSAKLYINHNPPPLSKSKEREMDKKDLDKSRERSRE
          I.EP.RE.KRRK.DSHPSPSHSST.KDSL..LK.SSAKLYINH.PP.L.KSKERE.DKKDLDKSRERSRE
Retrocopy ITEPERE-KRRKVDSHPSPSHSSTIKDSLVKLKESSAKLYINHIPPLLCKSKEREADKKDLDKSRERSRE

Parental  REKKDEKDRKERKRDHSNNDREVPPDITKRRKEENGTMGVSKHKSESPCESQYPNEKDKEKNKSKSSGKE
          REKK.EKDRKERKRD.SNNDRE.P.D..KRRK.ENG..GVSKHKSESPCES.YPNEKDKEK.KSKSSGKE
Retrocopy REKKEEKDRKERKRDYSNNDREAPLDLIKRRKDENGILGVSKHKSESPCESLYPNEKDKEKMKSKSSGKE

Parental  KSSSDSFKSEKMDKISSGGKKESRHDKEKIEKKEKRDSSGGKEEKKHHKSSDKHR
          K...DSFK.EK.DKISS.GKKES.HDKEKIEKKEK.D.SG.KEEKKHHK.SDKHR
Retrocopy K--GDSFKPEKIDKISS-GKKESGHDKEKIEKKEKWDGSGDKEEKKHHKTSDKHR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain	10.30 RPM	47.54 RPM
SRP007412_cerebellum	12.29 RPM	52.80 RPM
SRP007412_heart	5.26 RPM	31.44 RPM
SRP007412_kidney	15.34 RPM	49.28 RPM
SRP007412_liver	8.41 RPM	27.83 RPM
SRP007412_testis	18.89 RPM	20.58 RPM

ChIP-Seq

RNA Polymerase II actvity near the 5' end of retro_mmus_172 was not detected

EST

38 EST(s) were mapped to retro_mmus_172 retrocopy

EST ID	Start	End	Identity	Match	Mis-match	Score
AA068848	104520545	104520904	100	359	0	359
AA572037	104518188	104518593	99.3	402	3	399
AA600479	104521076	104521460	98.1	357	4	340
AA960344	104518114	104518599	98.4	475	8	465
AI504230	104518198	104518598	100	400	0	400
AI597176	104518188	104518565	100	377	0	377
AI854682	104518312	104518578	99.7	265	1	264
AI892372	104520562	104520952	96.7	382	8	372
AI325686	104520577	104520945	99.2	368	0	367
AV343400	104521165	104521432	98.6	263	4	259
AV511438	104518187	104518593	99.6	402	2	398
AV575994	104520967	104521455	99.8	484	1	480
AW210363	104517919	104518427	99.9	507	1	506
AW910405	104517523	104518004	99.4	478	3	475
AW910629	104518084	104518600	99.3	515	1	513
BB106980	104520779	104521070	98.3	286	5	281
BB311552	104518305	104518598	97	284	9	275
BB822507	104520640	104521076	98.2	428	7	419
BE656563	104518356	104518575	96.4	211	8	203
BG797147	104519837	104520390	95.4	535	3	510
BG963616	104520854	104521418	95.7	499	6	487
BI102160	104518525	104519177	99.1	651	0	648
BI661745	104517965	104518725	99	748	7	735
BY017109	104519724	104520081	98.6	355	2	352
BY122304	104521270	104521634	99.8	363	1	362
CB523252	104517677	104518355	97.4	676	1	672
CF163400	104518548	104518804	99.7	255	1	254
CJ049493	104518018	104518667	100	648	0	647
CJ050278	104518162	104518611	96.7	437	12	424
CJ309613	104520091	104520519	99.8	427	1	426
CN707081	104521659	104521954	100	295	0	295
CN710455	104521659	104521948	100	289	0	289
CN710897	104521659	104521926	100	267	0	267
CO424806	104520157	104520787	99.7	628	1	625
DW712126	104521199	104521461	97.3	244	7	236
EG563802	104518161	104518615	98.5	450	3	444
EG564833	104518343	104518615	99.3	270	2	268
EG564921	104518109	104518615	98.3	502	3	495

TSS

No TSS is located nearby retro_mmus_172 retrocopy 5' end.

Lab

retro_mmus_172 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_mmus_172 has 1 orthologous retrocopies within eutheria group .

Species	RetrogeneDB ID
Rattus norvegicus	retro_rnor_89

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000013656	4 retrocopies	retro_mluc_2531, retro_mluc_2546, retro_mluc_2599, retro_mluc_2606,
Mus musculus	ENSMUSG00000037475	1 retrocopy	retro_mmus_172 ,
Rattus norvegicus	ENSRNOG00000007315	1 retrocopy	retro_rnor_89,