RetrogeneDB ID: retro_mmur_976

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_1476:88768..89102(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PSMC3IP
• Ensembl ID: ENSMICG00000010266
• Aliases: None
• Description: PSMC3 interacting protein [Source:HGNC Symbol;Acc:17928]

Sequence

>retro_mmur_976
GCAGTAGCTGCAGCGGGAGCCACTGAGATCCTCCTGAGGTACCTGCAGGAGCAGAACTGGCCCTGGACATGTTCAGGACA
TGTTCAGGAACCTACAGTGGGAACATGGACTGGGCAAGGCAGTGGTGGTGAAGGTGCTGGAACAGCTGGCCCAACAAGGC
AAAATCAAAGAGAAGACATACGGCAAGCAGAAGATCTACTTTGCTGATCAGAACCAGTTTGATATGGTGAGTGATGCTGA
CCTCCACGGCCTGAATGCCGAAATTGTGGCCCTCACTGCTAAGGTGCAGAGCTAGCAGCAGACCTGCTGCCACATGGAGG
CTGAGCTGAAAGAG

Alignment

ORF - retro_mmur_976 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.43 %
• Parental protein coverage: 54.15 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  AEAAAGAASILLKYLQEQN-RPYSAQDVFGNLQRDHGLGKAAVVKALDQLAQQGKIKEKMYGKQKIYFAD
          A.AAAGA..ILL.YLQEQN..P.........LQ..HGLGKA.VVK.L.QLAQQGKIKEK.YGKQKIYFAD
Retrocopy AVAAAGATEILLRYLQEQN>GPXXXXXXXXXLQWEHGLGKAVVVKVLEQLAQQGKIKEKTYGKQKIYFAD

Parental  QEQFDMVSDADLQCLDAKIVDLTAKVQSLQQTCRHMEAEMQK
          Q.QFDMVSDADL..L.A.IV.LTAKVQS.QQTC.HMEAE...
Retrocopy QNQFDMVSDADLHGLNAEIVALTAKVQS*QQTCCHMEAELKE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_976 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_976 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000010266	1 retrocopy	retro_mmur_976 ,
Tarsius syrichta	ENSTSYG00000007620	1 retrocopy	retro_tsyr_323,