RetrogeneDB ID: retro_mmur_930

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_134909:114..1137(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CAT
• Ensembl ID: ENSMICG00000003672
• Aliases: None
• Description: catalase [Source:HGNC Symbol;Acc:1516]

Sequence

>retro_mmur_930
AAACCTGATGTCCTGACCACAGGACCTGGTAACCCAATAGGAAACAAACTGAACATGATGACAGCAGGGCCCCGCAGGCC
CCTGCTCGTTCAGGATGTGGTTGTCACTGATAAAAGGGCTCACTTTGACAGAGAGAGAATTCCCGAGGGAGTGGTGCATG
CTAAAGGAGCAGGAGGAGCCTTTGGCCACTTCGAGGTCATGCATGACATTACCAGATATTCCAAGGCAAAGGTGTCTGAG
AGTGTTGGAAAGAGAACTCCCATTGCAGTTTGATTCTCCACTGTTGCTGGAGAGCCAGGCTCAGCTGTCACAGTTTGTGA
TCCTCGTTGGGCTTGCAGTGAAATCTTACACAGAAGACGGTAACTGGGATCTTGTTGGAAATAATACCCCCATTTTCTTC
ATCAGGGATGCCATATTGCTCCTGTCCTTTATCCACAGCCAAAAGAGAAATCCTCAGACGCACCTGAAGGATCGGGACAG
GTCTGGGACTTCTGGAGCTGACACCCGGAGTCCCTGCGTCAGGTTTCTTTCCTGTTCAGTGATGGGGGGTTCCAGACAGA
CACCGCCTTGTGAATGGGTATGGATCGCATACTTTCAAGCTGGTGAATGCGGATAAAGAGGGAGTCTATTGCAAATTCCA
TTGTAAGACTGACCAGGGCATCAAAAACCTTTCTGTTGAAGATGCAGCCAGACTTTCCCAGGAAGATCCTGACTGTGGCC
TCCGGGATCTTTTCAATGCCATTGCTACAGGAAACTACCCCTCCTGGACTCTGTACATCCAGGTTGTGGCATTTAATCAA
GCAGAAGCTTGTCCATTTAATCCATTTGATGTCACCAAGGTTTGGCCTCACCAGGACTACCCTCTTATTCCAGTTGATAA
ACTGATCTTAGAACCGGAAACCCGTTAATTACTTTGCTGAAGTTAATCAGAACAGCCTTGTGAGCCAAAGAAACATGGCG
CCCCCCATGCAACCCCAGCCCTGGACAAAGTGGCTCCAGGGCTGCCATATTTCCTATGCTGAG

Alignment

ORF - retro_mmur_930 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.81 %
• Parental protein coverage: 66.87 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  KPHVLTTGAGNPIGNKLNIMTAGPRGPLLVQDVVFTDEMAHFDRERIPERVVHAKGAG-AFGYFEVTHDI
          KP.VLTTG.GNPIGNKLN.MTAGPR.PLLVQDVV.TD..AHFDRERIPE.VVHAKGAG.AFG.FEV.HDI
Retrocopy KPDVLTTGPGNPIGNKLNMMTAGPRRPLLVQDVVVTDKRAHFDRERIPEGVVHAKGAGGAFGHFEVMHDI

Parental  TRYSKAKVFESIGKRTPIAVRFSTVXXXXXXXXXXXXPR-GFAVKFYTEDGNWDLVGNNTPIFFIRDAIL
          TRYSKAKV.ES.GKRTPIAV.FSTV............PR.G.AVK.YTEDGNWDLVGNNTPIFFIRDAIL
Retrocopy TRYSKAKVSESVGKRTPIAV*FSTVAGEPGSAVTVCDPR>GLAVKSYTEDGNWDLVGNNTPIFFIRDAIL

Parental  FPSFIHSQKRNPQTHLKDPD-MVWDFWSLRPESLHQVSFLFSDRG-IADGHRHMNEYGSHTFKLGNANKE
          ..SFIHSQKRNPQTHLKD.D..VWDFWS..PESL.QVSFLFSD.G...D.HR..N.YGSHTFKL.NA.KE
Retrocopy LLSFIHSQKRNPQTHLKDRD<QVWDFWS*HPESLRQVSFLFSDGG<VPDRHRLVNGYGSHTFKLVNADKE

Parental  AV-CKFHYKTDQGIKNLSVEDAARLSQEDPDYGLRDLFNAIATENYPSWTLYIQVMTFNQAEACPFNPFD
          .V.CKFH.KTDQGIKNLSVEDAARLSQEDPD.GLRDLFNAIAT.NYPSWTLYIQV..FNQAEACPFNPFD
Retrocopy GVYCKFHCKTDQGIKNLSVEDAARLSQEDPDCGLRDLFNAIATGNYPSWTLYIQVVAFNQAEACPFNPFD

Parental  VTKVWPHKDYPLIPVGKLVL-NRNPVNYFAEVEQIAF-DPSNMPPGIEPSP-DKMLQGRLFSYPD
          VTKVWPH.DYPLIPV.KL.L.NR.PVNYFAEV.Q.......NM.P...P.P..K.LQG...SY..
Retrocopy VTKVWPHQDYPLIPVDKLIL>NRKPVNYFAEVNQNSLVSQRNMAPPMQPQPWTKWLQGCHISYAE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_930 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_930 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000003672	1 retrocopy	retro_mmur_930 ,
Xenopus tropicalis	ENSXETG00000003981	1 retrocopy	retro_xtro_41,