RetrogeneDB ID: retro_mmur_926

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_13273:14368..15299(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NOP56
• Ensembl ID: ENSMICG00000016553
• Aliases: None
• Description: NOP56 ribonucleoprotein [Source:HGNC Symbol;Acc:15911]

Sequence

>retro_mmur_926
CAGAAGTGGTATGGGTGTCACTTTCTGGAGCTGGTGAAGATCAACAGCAATGCCACATACTGCCTCCTCATCCAGTTCAT
TGCGAAGGGAAGGGAGCTGAATGAGGAAAAGCTGGAGAAGCTGGAGGAGCTAACAGTGGTTGGGGCCAAGACGAAGGCTA
TTCTGGATGCCTCATGGTCCTCCATGGGCACGGATATGTCTGCCATTGGCTTGACGAACATTGAGAGCTTCTCCCATCGT
GCTGTCTTTGTCAGAGCACCGCCAAGCCTACACACTTGCCTGCACTCCAAGACGAGCCAAGTAGCCTCCAGCCTGTCAGC
CCTAACCAGGGAAGTGGCAGGTGCTGTCATCCCTCAGGCTGGCTGCCTCCCCCGCCTGGCCAGGTACCTAGCATCCACAG
AACAGATCCTTGGGACCGAAAAGGCCCTGTTCAGAGCCCTAAAGACAAGGGTAACTCACCAAAATCTGGACTCATTTTCC
ACCCCACCTTCACTGGCCGAACACCTGCCGAGAAGAAAGGCCGTATCTCCCGAAACCTGGCAAACAAATGCAGTATTGCC
CCATGAATGACTGCTTCTCTGAGGTGCCTGTGAGTGTATCTGGGGAGAAGCTTTGAAAACAAGTGGAGGAATGGCTGTCC
TTCTATGGGACTGGAGAGATTCATGACAGAATCTGGATGGTGGTGGCAGGAAGGAAGTAATGGTTCAGCCAGAGGAAGCA
GTGGCTGAGATCACCAGGAAACTAAGAAACAGGAGAAGAAACCCTTGAAGAAGGGAGAGAAACAGCCGCTGCGCTTGCCC
TTGTGTCTTCAGAAAACAGCAGCTGTGCTCTGGAGGAGTGTGAGGAGACAGCTGAAAAATCCAAAAAGAAGAAAAAGCAA
AAGCTCCAGGAGCTTCCTCGGGAGAATGGAGTGGAAGGCTGCCCATCTGTC

Alignment

ORF - retro_mmur_926 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.38 %
• Parental protein coverage: 62.28 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  REWYGYHFPELVKIINDNATYCRLAQYIGNRRELNEEKLEKLEELTMDGAKAKAILDASRSSMGMDISAI
          ..WYG.HF.ELVKI.N.NATYC.L.Q.I...RELN..........T..GAK.KAILDAS.SSMG.D.SAI
Retrocopy QKWYGCHFLELVKI-NSNATYCLLIQFIAKGRELNXXXXXXXXXXTVVGAKTKAILDASWSSMGTDMSAI

Parental  DLINIESFSSRVVSLSEYRQSLHTYLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQIL
          .L.NIESFS.R.V.......SLHT.L.SK.SQVA.SLSAL..E..GA..I..AG.L..LA.Y.AST.QIL
Retrocopy GLTNIESFSHRAVFV-RAPPSLHTCLHSKTSQVASSLSALTREVAGA-VIPQAGCLPRLARYLASTEQIL

Parental  GAEKALFRALKTR-GNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRI-DCFSXXXXXXXXXXL
          G.EKALFRALKTR.GN.PK.GLIFH.TF.GR..A..KGRISR.LANKCSIA....DCFS..........L
Retrocopy GTEKALFRALKTR<GNSPKSGLIFHPTFTGRTPAEKKGRISRNLANKCSIAP*M<DCFSEVPVSVSGEKL

Parental  REQVEERLSFYETGEIPRK-NLD--VMKEAVVQAEEAAAEIARKL-EKQEKKRLKKEKKR-LAALAL-AS
          ..QVEE.LSFY.TGEI....NLD....KE..VQ.EEA.AEI.RKL..KQEKK.LKK..K...AALAL..S
Retrocopy *KQVEEWLSFYGTGEIHDR<NLDGGGRKEVMVQPEEAVAEITRKL<KKQEKKPLKKGEKQ<AAALALVSS

Parental  ENSSSTQEECEETVEKPKKKKKQKPQEVPQENGMEDHPSI
          ENSS...EECEET............QE.P.ENG.E..PS.
Retrocopy ENSSCALEECEETAXXXXXXXXXXXQELPRENGVEGCPSV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_926 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_926 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000016553	2 retrocopies	retro_mmur_1124, retro_mmur_926 ,