RetrogeneDB ID: retro_mmur_876

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_117455:117..1359(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMICG00000001725
• Aliases: None
• Description: None

Sequence

>retro_mmur_876
TACTTTGAATTTGTGGTAGATGACTTGCCAATCCGTGGCTTTGTTGGCTACACGGAGGAGAGTGGCTTCCTGCCACACAG
CCACAAGATAGGACTATGGACCCATTTGGACTTCCACCTAGAATTCCATGGAGATCGAATTATATTTGCCAATGTTTTCG
GTGCGGGATGTCAAGCCCCACAGCTTGGATGGGTTACAACCCGATGAGTTCCTACGCCTTACTCACACTTACAGTGTGCG
CTGGTCTGAGACTTCAGTGGCACGTCGGAGTGACAGGCGCCGTGGTGATGATGGTGGTTTCTTTCCCCGAACACTGGAAA
TCCATTGGTTGTCTATCATCAACTCCATAGTGCTTGTGTTTTCACTGGTGGGTTTTGTGGCTGTCATTCTAATGCGTGTG
CTTCGGAATGACCTGGCTCGCTATAACTTGGACGAGGAGACCACTTCTGGAAGTTCTGGTGATGATTTTGACCAGGGTGA
CAACGGCTGGAAAATTATCCATACAGATGTCTTCCGCTTCCCTCCATACCGTGGTCTGCTCTGTGCCGTGCTTGGCGTGG
GTGCCCAGTTCCTGGCCCTTGGCACTGGCATTATTGTCATGGCACTGCTGGGCATGTTCATTGTGCATCGTCATGGGTCC
ATTAACTCGGCAGCCATCTTGTTGTATGCCCTGACCTGCTGCATCTCTGGCTACGTGTCCAGCCACTTCTACCGACAGAT
TGGAGGCAAATGTTGAGTGTGGAACATCATTCTCACCACCAGTCTCTTCTCTGTGCCTTTCTTCCTGACGTGGAGTGTGG
TGAACTCGGTGCATTGGGCCAATGGTTCGACACAGGCTCTGCCAGCCACCACTATCCTGCTGCTTCTGACGGTTTGGCTG
CTGGTGGGCTTTCCCCTCACTGTCATCGGAGGCATCTTCGGGAAGAACAACGCTAGCTCCTTTGATGCACCTTGTCGCAC
CAAGAACATCGCCCGGGAGATCTCATCCCAGCCCTGGTACAAGTCTACTTTCATCCATATGACTGTTGGAGGCTTCCTGC
CTTTCAGTGCCATCTCCGTGGAGCTGTACTACATCTTTGCCACAGTGTGGGGTCGGGAGCAGTACACTTTGTATGGCATC
CTCTTCTTTGTCTTCGCCATCCTGCTGAGTGTGGGAGCTTCCATCTCCATTGCACTCACCTACTTCCAGTTGTCTGGACA
GGATCAACGCTGGTGGTGGGATCTGTGCTGAGTGTTGGCTCC

Alignment

ORF - retro_mmur_876 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.55 %
• Parental protein coverage: 68.26 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  YFEFVVDDLPIRGFVGYMEESGFLPHSHKIGLWTHLDFHLEFHGDRIIFANV-SVRDVKPHSLDGLQPDE
          YFEFVVDDLPIRGFVGY.EESGFLPHSHKIGLWTHLDFHLEFHGDRIIFANV.SVRDVKPHSLDGLQPDE
Retrocopy YFEFVVDDLPIRGFVGYTEESGFLPHSHKIGLWTHLDFHLEFHGDRIIFANV>SVRDVKPHSLDGLQPDE

Parental  FLRLXXXXXXXXXXXXXXXXSDRRRGDDGGFFPRTLEIHWLSIIN-MVLVFLLVGFVAVILMRVLRNDLA
          FLRL................SDRRRGDDGGFFPRTLEIHWLSIIN..VLVF.LVGFVAVILMRVLRNDLA
Retrocopy FLRLTHTYSVRWSETSVARRSDRRRGDDGGFFPRTLEIHWLSIINSIVLVFSLVGFVAVILMRVLRNDLA

Parental  RYNLDEETTSGSSGDDFDQGDNGWKIIHTDVFRFPPYRGLLCAVLGVGAQFLALGTGIIVMALLGMFNVH
          RYNLDEETTSGSSGDDFDQGDNGWKIIHTDVFRFPPYRGLLCAVLGVGAQFLALGTGIIVMALLGMF.VH
Retrocopy RYNLDEETTSGSSGDDFDQGDNGWKIIHTDVFRFPPYRGLLCAVLGVGAQFLALGTGIIVMALLGMFIVH

Parental  RHGSINSAAILLYALTCCISGYVSSHFYRQIGGERWVWNIILTTSLFSVPFFLTWSVVNSVHWANGSTQA
          RHGSINSAAILLYALTCCISGYVSSHFYRQIGG...VWNIILTTSLFSVPFFLTWSVVNSVHWANGSTQA
Retrocopy RHGSINSAAILLYALTCCISGYVSSHFYRQIGGKC*VWNIILTTSLFSVPFFLTWSVVNSVHWANGSTQA

Parental  LPATTILLLLTVWLLVGFPLTVIGGIFGKNNASSFDAPCRTKNIAREIPSQPWYKSTFIHMTVGGFLPFS
          LPATTILLLLTVWLLVGFPLTVIGGIFGKNNASSFDAPCRTKNIAREI.SQPWYKSTFIHMTVGGFLPFS
Retrocopy LPATTILLLLTVWLLVGFPLTVIGGIFGKNNASSFDAPCRTKNIAREISSQPWYKSTFIHMTVGGFLPFS

Parental  AISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWWW-RSVLSVGS
          AISVELYYIFATVWGREQYTLYGILFFVFAILLSVGA.ISIALTYFQLSG.D.RWWW..SVLSVGS
Retrocopy AISVELYYIFATVWGREQYTLYGILFFVFAILLSVGASISIALTYFQLSGQDQRWWW<GSVLSVGS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_876 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_876 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000001725	1 retrocopy	retro_mmur_876 ,
Nomascus leucogenys	ENSNLEG00000015344	1 retrocopy	retro_nleu_1965,