RetrogeneDB ID: retro_mmur_831

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_107878:631..1328(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: BZW1
• Ensembl ID: ENSMICG00000003355
• Aliases: None
• Description: basic leucine zipper and W2 domains 1 [Source:HGNC Symbol;Acc:18380]

Sequence

>retro_mmur_831
GTGCTGTTCTTAAAGGGTTTTTCAGAGTTGGAGAGGAGCAAGCTAGCTATGTTAACTGGTGTTCTTCTGGCTACTGGAAT
ACTTAATGCATCCATTCTCAATAGCCTTTATAATGAGAATCTGGTTAAAGAAGGGGTCTCAGTAGCTTTTGCTGTAAAGC
TCTTTAAATCATGGATAAACAAAAAAGATATCAATGCAGTAGCTGCAAGACTTCGGAAAGTCAGCATGGATAACAGACTG
ATAGAACTCTTGCCTGACAATAAGCAAAGCGTTGAACACTTTGCAAAGTATTTTACTGCAGCAGGCTTGAAAGAGCTTTC
AGAGCATGTTCGGAATCAGCAAACCATAGGAGCTTGGAGGGGGCTCCAGAAGAAACTTCAAGAACAGGTGTCTCCTGGTG
GTCCATTTAAGCATATAATTTTACATGTCAAGGAGGAGTTGAAAAAAAACATCCCAGAACCGGTTGTCACTGGGATAGTC
TGGTCAAGTGTAATGAGCACCGTGGGATGGAACAAAGAGAGGAGCTTTTAGGAGAGCAAGCCATCAAGCACTTGAAGCAA
TGCAGCACTCTACTTGCTGTCTTTACCACCCAAGGTCAGTCTGAGCTGACTCTGTTATTGAAGGTGCAGGAATATTGCAC
ATGACAAACATTCATTTCATGAAAGCCTTCCAGAAAATAGTGGTGTCTTTTAATAAA

Alignment

ORF - retro_mmur_831 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.51 %
• Parental protein coverage: 64.36 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  LLFLKGFSESERNKLAMLTGVLLANGTLNASILNSLYNENLVKEGVSAAFAVKLFKSWINEKDINAVAAS
          .LFLKGFSE.ER.KLAMLTGVLLA.G.LNASILNSLYNENLVKEGVS.AFAVKLFKSWIN.KDINAVAA.
Retrocopy VLFLKGFSELERSKLAMLTGVLLATGILNASILNSLYNENLVKEGVSVAFAVKLFKSWINKKDINAVAAR

Parental  LRKVSMDNRLMELFPANKQSVEHFTKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDII
          LRKVSMDNRL.EL.P.NKQSVEHF.KYFT.AGLKELSE.VRNQQTIGA...LQK.LQEQ.S.G.PFK.II
Retrocopy LRKVSMDNRLIELLPDNKQSVEHFAKYFTAAGLKELSEHVRNQQTIGAWRGLQKKLQEQVSPGGPFKHII

Parental  LYVKEEMKKNNIPEPVVIGIVWSSVMSTVEWNK-KEELVAEQAIKHLKQYSPLLAAFTTQGQSELTLLLK
          L.VKEE.....IPEPVV.GIVWSSVMSTV.WNK..EEL..EQAIKHLKQ.S.LLA.FTTQGQSELTLLLK
Retrocopy LHVKEEL-XXXIPEPVVTGIVWSSVMSTVGWNK<REELLGEQAIKHLKQCSTLLAVFTTQGQSELTLLLK

Parental  IQEYC-YDNIHF-MKAFQKIVVLFYK
          .QEYC..D...F.MKAFQKIVV.F.K
Retrocopy VQEYC>HDKHSF>MKAFQKIVVSFNK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_831 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_831 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000003543	8 retrocopies	retro_chof_1519, retro_chof_2060, retro_chof_2092, retro_chof_2451, retro_chof_2517, retro_chof_689, retro_chof_726, retro_chof_838,
Microcebus murinus	ENSMICG00000003355	1 retrocopy	retro_mmur_831 ,
Monodelphis domestica	ENSMODG00000015000	1 retrocopy	retro_mdom_1747,
Tarsius syrichta	ENSTSYG00000013638	2 retrocopies	retro_tsyr_2177, retro_tsyr_483,
Tursiops truncatus	ENSTTRG00000003639	1 retrocopy	retro_ttru_153,