RetrogeneDB ID: retro_mmur_818

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_10300:45983..46969(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMICG00000012269
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ADIPOR2
• Ensembl ID: ENSMICG00000005653
• Aliases: None
• Description: adiponectin receptor 2 [Source:HGNC Symbol;Acc:24041]

Sequence

>retro_mmur_818
ACCTCTGAGGAGCATGAGTGCATTGATGAAGCTTCTCAGGAAGATGACGGGTTTATGGGGATGTCCCTTCTCTTACAAGC
CCATCATGCTATGGAAAGAATGGAAGAGTTTGTTTCTAAGGTCTGGGAAGGACGGTGGCGAGTAATCCCTCATGATGTAC
TACCAGACTGGCTCAAGGATAACGACTTCCTTCTACATGGACACCGGCCTCCTATGCCTTCATTCCGAGCCTGTTTTAAG
AGCATTTTCAGAATACACACAGAGACAGGCAACATCTGGACACATCTCTTAGGTTGTGTATTCTTCCTGTGCCTGGGGAT
CTTTTATATGTTCCGCCCAAACATCTCCTTTGTGGCCCCTCTGCAAGAGAAAGTGGTCTTTGGATTATTTTTCTTGGGAG
CCATTCTCTGCCTTTCTTTTTCTTGGCTCTTCCATACAGTCTACTGCCACTCAGAAGGGGTTTCCCGGCTCTTCTCTAAA
CTGGATTACTCTGGTATTGCTCTTCTGATTATGGGAAGTTTTGTTCCTTGGCTTTATTATTCTTTCTACTGTAATCCACA
ACCTTGCTTCATCTACTGGATTGTCATCTGTGTGCTGGGCATTGCAGCCATTATAGTCTCCCAGTGGGACATGTTTGCCA
CTCCTCAGTATCGGGGAGTAAGAGCAGGTGTGTTTTGGGGCCTAGGCCTGAGTGGAATCATTCCCACCTTGCACTATGTC
ATCTCCAGGGATTCCTGAAGGCTGCCACCATAGGTCAGATTGGCTGGTTGCTGTTGATGGCCAGCCTCTACATTACAGGG
GCAGCCCTATATGCTGCCCACATCCCTGAAAGCTTCTTTCCTGGCAAATGTGATATCTGGTTTCACTCTCATCAGTTGTT
TCATATCTTCGTGGTTGCCGTAGCTTTTGTTCACTTCCATGGTGTCTCAAACCTGCAGGAGTTACGTTTCATGATCGGCG
GGGGCTGCAGTGAGGAGGATGCACTG

Alignment

ORF - retro_mmur_818 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.67 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SSEEHECIDEASQEDDGFMGMSPLLQAHHAMERMEEFVCKVWEGRWRVIPHDVLPDWLKDNDFLLHGHRP
          .SEEHECIDEASQEDDGFMGMS.LLQAHHAMERMEEFV.KVWEGRWRVIPHDVLPDWLKDNDFLLHGHRP
Retrocopy TSEEHECIDEASQEDDGFMGMSLLLQAHHAMERMEEFVSKVWEGRWRVIPHDVLPDWLKDNDFLLHGHRP

Parental  PMPSFRACFKSIFRIHTETGNIWTHLLGCVFFLCLGIFYMFRPNISFVAPLQEKVVFGLFFLGAILCLSF
          PMPSFRACFKSIFRIHTETGNIWTHLLGCVFFLCLGIFYMFRPNISFVAPLQEKVVFGLFFLGAILCLSF
Retrocopy PMPSFRACFKSIFRIHTETGNIWTHLLGCVFFLCLGIFYMFRPNISFVAPLQEKVVFGLFFLGAILCLSF

Parental  SWLFHTVYCHSEGVSRLFSKLDYSGIALLIMGSFVPWLYYSFYCNPQPCFIYLIVICVLGIAAIIVSQWD
          SWLFHTVYCHSEGVSRLFSKLDYSGIALLIMGSFVPWLYYSFYCNPQPCFIY.IVICVLGIAAIIVSQWD
Retrocopy SWLFHTVYCHSEGVSRLFSKLDYSGIALLIMGSFVPWLYYSFYCNPQPCFIYWIVICVLGIAAIIVSQWD

Parental  MFATPQYRGVRAGVFLGLGLSGIIPTLHYVIS-EGFLKAATIGQIGWLLLMASLYITGAALYAARIPERF
          MFATPQYRGVRAGVF.GLGLSGIIPTLHYVIS..GFLKAATIGQIGWLLLMASLYITGAALYAA.IPE.F
Retrocopy MFATPQYRGVRAGVFWGLGLSGIIPTLHYVIS<QGFLKAATIGQIGWLLLMASLYITGAALYAAHIPESF

Parental  FPGKCDIWFHSHQLFHIFVVAGAFVHFHGVSNLQEFRFMIGGGCSEEDAL
          FPGKCDIWFHSHQLFHIFVVA.AFVHFHGVSNLQE.RFMIGGGCSEEDAL
Retrocopy FPGKCDIWFHSHQLFHIFVVAVAFVHFHGVSNLQELRFMIGGGCSEEDAL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_818 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_818 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 7 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000009050	1 retrocopy	retro_btau_320,
Choloepus hoffmanni	ENSCHOG00000012668	1 retrocopy	retro_chof_1133,
Callithrix jacchus	ENSCJAG00000000683	3 retrocopies	retro_cjac_2912, retro_cjac_3290, retro_cjac_504,
Loxodonta africana	ENSLAFG00000021355	1 retrocopy	retro_lafr_249,
Microcebus murinus	ENSMICG00000005653	1 retrocopy	retro_mmur_818 ,
Microcebus murinus	ENSMICG00000007942	3 retrocopies	retro_mmur_1199, retro_mmur_184, retro_mmur_764,
Myotis lucifugus	ENSMLUG00000002211	1 retrocopy	retro_mluc_66,