RetrogeneDB ID: retro_mmur_787

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_863:4249..4577(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: BRK1
• Ensembl ID: ENSMICG00000002361
• Aliases: None
• Description: BRICK1, SCAR/WAVE actin-nucleating complex subunit [Source:HGNC Symbol;Acc:23057]

Sequence

>retro_mmur_787
GCAGCAGCCATGGCAGGCCAAGAGGACCCGGTGCCCCGGGAGATTCACCAGGACTGAGCGAACCGCGGGTACATCGAGGT
CATCACCAGCAGCATCAAGAAGATCTCGGACTTTCTCAACTCGTTCGATTTGTTTTGTCGTTCAAGACTCGCAACGCTAA
ACGAGAAATTGACAGCCCTTGAACGGAGAATAGAGTACATCGAAGCACAGGTGACAAAAGGTGAGACACTCACCCAGAAG
TATGCCATGCTGCTGCTGGGAAGTTGCTTGACAGAAAGCAGGCCCTGTGGGAAAGGCCCCAGCAACCTTCAGCTCCCTCC
TTTCTCCT

Alignment

ORF - retro_mmur_787 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.64 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  AAAMAGQEDPVQREIHQDWANREYIEVITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEAR
          AAAMAGQEDPV.REIHQD.ANR.YIEVITSSIKKI.DFLNSFD..CRSRLATLNEKLTALERRIEYIEA.
Retrocopy AAAMAGQEDPVPREIHQD*ANRGYIEVITSSIKKISDFLNSFDLFCRSRLATLNEKLTALERRIEYIEAQ

Parental  VTKGETLRSMPC-CC-WEVA-QKAGPV-KAPAAFSSFLSP
          VTKGETL......CC.WEVA.QKAGPV.KAPA.FSS.LSP
Retrocopy VTKGETLTQKYA>CCCWEVA*QKAGPVGKAPATFSSLLSP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_787 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_787 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000002361	1 retrocopy	retro_mmur_787 ,