RetrogeneDB ID: retro_mmur_776

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_808:344168..345115(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: AEN
• Ensembl ID: ENSMICG00000015849
• Aliases: None
• Description: apoptosis enhancing nuclease [Source:HGNC Symbol;Acc:25722]

Sequence

>retro_mmur_776
ATGGTACTCCAGGAAGGCCCTGAGTCTGCCCAGTGCCTGTGCCCTTCCCTTGCCAGCCTGAATGCCAAGGATGTGTTTCG
GAGATGGCACAAGAGGAGGAGCCGACAGCACCAGTGGTTCACGGCGTGGAAGGCCTTGTTGCAGGAGCAGGGGCTGCTGA
GCATGCCTCCAGAGCCAGGGCCTCCCGCTGCCCAGCCCGCTGGGGGCAACACCAGGCACAGAAGCTGCCAGCAGCAGGGA
GGCAGCGTCCTAGAGCTGGAGCTTGTTCTGCCCCTGGAGCAGAAGGCCTGCCCCCAGGGAAGCCTCTGGGCCCTTGCCCA
GCAAGTACGTGGCTATCAATTGTGAGATGGTGGGCACAGGACCCCAAGGGTGGGTCTGTGAGCTGGCCTGCTGCTCCCTG
GTGAGTTACCATGGCGACATCCTCTATGACAAGTACATCTGGCCTGAGATGCCCCTTGTTGACTCCCACACCCACTGGAG
CAACATCACTCGGCAGCACATGCACAAGGCCATCCCCTTCCAGGTGGCCTAGGAAGAGATCCTTAAGCTCCTGAAGGGCA
AGGTGGTGGTGGGGCACACGTTGCACAATGACTTCCAGGCCCTCAAATACGTCCACCCTCAGAGCCAGACGGGGCATGCC
ACCTATATCCCAAACCTCCTCAACCCGCCTGGCCTCCACACCCGGGGCCCACGTCTCTCTGAAGGACCTGGCCCTGCAGC
TGCTACACAAGAAGATCCAGGTGGACCAGCGAGGGCACTCCTCAGCGGAAGATGCCACGACAGCCATGGAGCTCTCACCA
GTTGGGGAAGTGCAGTGGGAACAGCAGGAGGCCAGCAGCTCCTGGGCCCGCCCCAAGGACAGAGAGCCTGACAGCAGCAC
AGACGTGGAGCAGTACACGGAGGACCAGTACTGGCCTGAGGCCCTGGCCCAGGGCAGCAGCGGAGGA

Alignment

ORF - retro_mmur_776 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.78 %
• Parental protein coverage: 97.2 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  MVPREAAESAQCLCPSL----AKDVLRRRHKRRSRQHQRFMARKALLQEQGLLSTPPPEPG-ASPLP-SS
          MV..E..ESAQCLCPSL....AKDV.RR.HKRRSRQHQ.F.A.KALLQEQGLLS..PPEPG.AS..P.S.
Retrocopy MVLQEGPESAQCLCPSLASLNAKDVFRRWHKRRSRQHQWFTAWKALLQEQGLLSM-PPEPG<ASRCP<SP

Parental  SGATPGSAAASSK-RQHPRAGSGSAPG-SRRPAPTEVSGPSPSKYVAIDCEMVGTGPRGWVSELARCSVV
          .GATPG..AASS..RQ.PRAG..SAPG.SRRPAP.E.SGP.PSKYVAI.CEMVGTGP.GWV.ELA.CS.V
Retrocopy LGATPGTEAASSR>RQRPRAGACSAPG<SRRPAPREASGPLPSKYVAINCEMVGTGPQGWVCELACCSLV

Parental  SYHGDVLYDKYIRPEMPIVDYRTRWSGITRQHMRKAIPFQVAQKEILKLLKGKVVVGHALHNDFQALKYV
          SYHGD.LYDKYI.PEMP.VD..T.WS.ITRQHM.KAIPFQVA..EILKLLKGKVVVGH.LHNDFQALKYV
Retrocopy SYHGDILYDKYIWPEMPLVDSHTHWSNITRQHMHKAIPFQVA*EEILKLLKGKVVVGHTLHNDFQALKYV

Parental  HPRSQTRDTTYVPNLLNPPGLHTR-ARVSLKDLALQLLHKKIQVGKHGHSSVEDATTAMELYRLVEVQWE
          HP.SQT...TY.PNLLNPPGLHTR.A.VSLKDLALQLLHKKIQV...GHSS.EDATTAMEL....EVQWE
Retrocopy HPQSQTGHATYIPNLLNPPGLHTR>AHVSLKDLALQLLHKKIQVDQRGHSSAEDATTAMELSPVGEVQWE

Parental  QQEASSPWARPEDREPDSSTDMEQYMEDPTQHALKKPGKQGG
          QQEASS.WARP.DREPDSSTD.EQY.ED.........G..GG
Retrocopy QQEASSSWARPKDREPDSSTDVEQYTEDQYWPEALAQGSSGG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_776 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_776 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000011521	1 retrocopy	retro_cfam_2183,
Erinaceus europaeus	ENSEEUG00000007015	1 retrocopy	retro_eeur_364,
Microcebus murinus	ENSMICG00000015849	1 retrocopy	retro_mmur_776 ,
Tursiops truncatus	ENSTTRG00000014668	1 retrocopy	retro_ttru_1742,