RetrogeneDB ID: retro_mmur_630

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_4292:2419464..2420916(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MTMR12
• Ensembl ID: ENSMICG00000002269
• Aliases: None
• Description: myotubularin related protein 12 [Source:HGNC Symbol;Acc:18191]

Sequence

>retro_mmur_630
ATATGGTGTTGGTCCTGCCACAATGGAAGTGCCCTTTTGAAAATGTCAGCACTGCCCAAAGAACAGGATGATGGCATTTT
ACAAATCCAGAAGAGCTTCTTGGATGGAATTTACAAGACCATCCATAGGCCACCCTATGAAATTGTTAAAACTGAAGACC
TGTCAGGCAACTTCCTATCCCTGCAGGAAATCCAGACTGCATACTCTAAATTTAAACAGCTGTTTCTGATAGATAACAGC
ACTGAATTTTGGGACACGGATATAAAATGGTTTTCTCTGTTGGAAAGTAGCAGCTGGCTTGACATAATCAGACGTTGCCT
GAAAAAAGCAATAGAGATTACGGAATGCATGGAGGCACAAAACATGAACGTTCTTCTTTTAGAGGAGAATGCATCCGACC
TCTGCTGCCTCATTTCCTCTCTGGTGCAAGTGATGATGGACCCCCACTGCAGAACCAGGATTGGTTTCCAGAGCCTCGTC
CAGAAGGAGTGGGTCATGGGTGGCCACTGTTTCTTGGATCGCTGCAACCACCTCCGCCAGAGTGACAAAGAGGAGGTTCC
TGTGTTCCTGCTTTTCTTAGATTGTGTCTGGCAGCTGGTACACCAGCATCCTCCAGCATTTGAATTCACAGAGACTTACC
TGACTGTTTTGTCAGATAGCCTATACATTCCTATTTTTAGCACCTTCTTCTTCAATTCGCCTCATCAAAAAGATACTAAT
GTGGGCAGGGAAAGCCAGGATACACAAAGCAAGCCTTTGAATCTGCTCTCCGTGTGGGACTGGTCTGTGCAGTTTGAACC
CAAAGCCCAGACGTTGCTCAAAAACCCTCTTTACGTGGAAAAGCCAAAGCTGGACAAAGGCCAACGGAAAGGAGTGCGTT
CCAAACATCAACGACAACTTTCTTTGCCACTCACCCAATCTAAGTCATCTCCCAAAAGAGGATTTTTCAGGGAAGAAACA
GATCATTTAATTAAAAACCTTCTGGGCAAGAGAATTAGCAAACTTATTAATTCTTCCGACGAGCTGCAAGACAACTTTCG
AGAGTTCTATGACAGCTGGCATAGCAAGCCCACTGACTATCACGGTTTGTTGTTGCCTCATATAGAGGGACCAGAAATCA
GAGTCTGGGCCCAGCGCTACTTGCGTTGGATTCCAGAAGCCCAAATCCTAGGTGGTGGCACAGTGGCCACTATGAGCAAA
CTCTTGGAAATGATGGAGGAAGTCCAGAGCTTACAAGAGAAAATCGAGGAGAGACACCACAGCCAGGAGGCCCCCCAGGC
AGAGCCCCCCTGCCTGCTGAGGAACTCTGCCCGCCTGTCCTCTTTGTTTCCCTTTGCTTTGCTGCAGCGACATTCCTCCA
AGCCCGTCTTGCCCACCAGTGGCTGGAAAGCTTTGGGAGATGAGGAAGATTTGGCCAAACGAGAAGATGAGTTTGTGGAT
CTAGGGGACGTG

Alignment

ORF - retro_mmur_630 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 100. %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  IWCWSCHNGSALLKMSALPKEQDDGILQIQKSFLDGIYKTIHRPPYEIVKTEDLSGNFLSLQEIQTAYSK
          IWCWSCHNGSALLKMSALPKEQDDGILQIQKSFLDGIYKTIHRPPYEIVKTEDLSGNFLSLQEIQTAYSK
Retrocopy IWCWSCHNGSALLKMSALPKEQDDGILQIQKSFLDGIYKTIHRPPYEIVKTEDLSGNFLSLQEIQTAYSK

Parental  FKQLFLIDNSTEFWDTDIKWFSLLESSSWLDIIRRCLKKAIEITECMEAQNMNVLLLEENASDLCCLISS
          FKQLFLIDNSTEFWDTDIKWFSLLESSSWLDIIRRCLKKAIEITECMEAQNMNVLLLEENASDLCCLISS
Retrocopy FKQLFLIDNSTEFWDTDIKWFSLLESSSWLDIIRRCLKKAIEITECMEAQNMNVLLLEENASDLCCLISS

Parental  LVQVMMDPHCRTRIGFQSLVQKEWVMGGHCFLDRCNHLRQSDKEEVPVFLLFLDCVWQLVHQHPPAFEFT
          LVQVMMDPHCRTRIGFQSLVQKEWVMGGHCFLDRCNHLRQSDKEEVPVFLLFLDCVWQLVHQHPPAFEFT
Retrocopy LVQVMMDPHCRTRIGFQSLVQKEWVMGGHCFLDRCNHLRQSDKEEVPVFLLFLDCVWQLVHQHPPAFEFT

Parental  ETYLTVLSDSLYIPIFSTFFFNSPHQKDTNVGRESQDTQSKPLNLLSVWDWSVQFEPKAQTLLKNPLYVE
          ETYLTVLSDSLYIPIFSTFFFNSPHQKDTNVGRESQDTQSKPLNLLSVWDWSVQFEPKAQTLLKNPLYVE
Retrocopy ETYLTVLSDSLYIPIFSTFFFNSPHQKDTNVGRESQDTQSKPLNLLSVWDWSVQFEPKAQTLLKNPLYVE

Parental  KPKLDKGQRKGVRSKHQRQLSLPLTQSKSSPKRGFFREETDHLIKNLLGKRISKLINSSDELQDNFREFY
          KPKLDKGQRKGVRSKHQRQLSLPLTQSKSSPKRGFFREETDHLIKNLLGKRISKLINSSDELQDNFREFY
Retrocopy KPKLDKGQRKGVRSKHQRQLSLPLTQSKSSPKRGFFREETDHLIKNLLGKRISKLINSSDELQDNFREFY

Parental  DSWHSKPTDYHGLLLPHIEGPEIRVWAQRYLRWIPEAQILGGGTVATMSKLLEMMEEVQSLQEKIEERHH
          DSWHSKPTDYHGLLLPHIEGPEIRVWAQRYLRWIPEAQILGGGTVATMSKLLEMMEEVQSLQEKIEERHH
Retrocopy DSWHSKPTDYHGLLLPHIEGPEIRVWAQRYLRWIPEAQILGGGTVATMSKLLEMMEEVQSLQEKIEERHH

Parental  SQEAPQAEPPCLLRNSARLSSLFPFALLQRHSSKPVLPTSGWKALGDEEDLAKREDEFVDLGDV
          SQEAPQAEPPCLLRNSARLSSLFPFALLQRHSSKPVLPTSGWKALGDEEDLAKREDEFVDLGDV
Retrocopy SQEAPQAEPPCLLRNSARLSSLFPFALLQRHSSKPVLPTSGWKALGDEEDLAKREDEFVDLGDV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_630 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_630 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000018909	1 retrocopy	retro_cfam_1523,
Microcebus murinus	ENSMICG00000002269	1 retrocopy	retro_mmur_630 ,