RetrogeneDB ID: retro_mmur_529

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_369:243874..244676(+)
• Located in intron of: ENSMICG00000006956

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FANCE
• Ensembl ID: ENSMICG00000012463
• Aliases: None
• Description: Fanconi anemia, complementation group E [Source:HGNC Symbol;Acc:3586]

Sequence

>retro_mmur_529
CAGCCTGTCCTGGGAGCTGAAACCAGCAAGGCTAGTGCGATACGGGAGGATGCTAAGGGTCCAGCTGAGGGTTTGGTGCT
TCCCAAAGCTCTCTAGGACCAGGTTCCCAGGCTGCAGCAGCTGCTGAAGATCTTTGGGGAAGGGCTGGAGGGGCTGGAGG
AGGCCGCCCCAGTTGAGCTACAGCTTTTGCACGAATGCAGTCCCAACCGGATGGACCTGCTATGCATCCAGTTGCAGCTC
CCCCAGCTCTCGGACACAGGTCTCCTGCAGCTCTGCACCTGGCTGCTGGCCCTGTCACCAGATCTTAGCTTCAGTAATGC
CACTGTGGTGACCAGGAGCCTCTTTCTTGGATGGATCCTCTCCTTGACTTCCTCAGCCTCTCGCTTGCTTAACAACTGCC
CAGACCTCCTTCTGTGCCACTTACACCCACCCTGTCTGCAGAGCCCTCCTTGGCCCTGTGCTCCAGGCCCCAGACACGGG
GCCAGCTCAGAGTTACTGTGTTGCCTAATGAAGGACGAGTCTCTGGAGGCAGATGCCCTGGTTCTAATGCTGGGACAGAT
CTTGGAGCTGCCTTGGAAGGAGGAAACTTTTCTTGGTGTTTCAGTCACTCCTGGAGTGTCAGGTAGAGATGACCCCTGAG
AAGTTCAGTGTCTTGATGGAGACGCTCTGTAAAGAGGGGCTGGCAGCCACCACCTCCATGGCCTATGCCAAGCTGATGCT
GACAGCGACGATCAAGTACCAGGCCAATATCACTCAGATGCAGAGGCTGGGCCTGGCTGTGGCCCTAGAGGTCAACACCA
CC

Alignment

ORF - retro_mmur_529 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.35 %
• Parental protein coverage: 50.86 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  QPVLGAETSKASASLEDAKGPAEGLVLPKALQDQVPRLQQLLKTFGEGLEGLD--APKELQLLHECNPSQ
          QPVLGAETSKASA..EDAKGPAEGLVLPKAL.DQVPRLQQLLK.FGEGLEGL...AP.ELQLLHEC.P..
Retrocopy QPVLGAETSKASAIREDAKGPAEGLVLPKAL*DQVPRLQQLLKIFGEGLEGLEEAAPVELQLLHECSPNR

Parental  MDLLCAQLQLPQLSDAGLLQLCTWLLALSPDLSFSNATVLTRSLFLGRILSLTSSASRL-LTTALTSFCA
          MDLLC.QLQLPQLSD.GLLQLCTWLLALSPDLSFSNATV.TRSLFLG.ILSLTSSASRL.LTTA.TSFCA
Retrocopy MDLLCIQLQLPQLSDTGLLQLCTWLLALSPDLSFSNATVVTRSLFLGWILSLTSSASRL>LTTAQTSFCA

Parental  KYTHPVCTALLGPVLQAPGTGPAQTE-LLCCLMKDESLEPDALALMLGQILELPWKEAT-FLVLQSLLER
          .YTHPVC.ALLGPVLQAP.TGPAQ...L.C.LMKDESLE.DAL.LMLGQILELPWKE.T.FLV.QSLLE.
Retrocopy TYTHPVCRALLGPVLQAPDTGPAQSY<LCC-LMKDESLEADALVLMLGQILELPWKEET>FLVFQSLLEC

Parental  QVEMTPEKFSVLMEKLCKEGLAATTSMAYAKLMLTVIIKYQANITETQRLGLAVALEPNTT
          QVEMTPEKFSVLME.LCKEGLAATTSMAYAKLMLT..IKYQANIT..QRLGLAVALE.NTT
Retrocopy QVEMTPEKFSVLMETLCKEGLAATTSMAYAKLMLTATIKYQANITQMQRLGLAVALEVNTT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_529 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_529 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000012463	1 retrocopy	retro_mmur_529 ,