RetrogeneDB ID: retro_mmur_449

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_3201:390560..390828(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MLF2
• Ensembl ID: ENSMICG00000010652
• Aliases: None
• Description: myeloid leukemia factor 2 [Source:HGNC Symbol;Acc:7126]

Sequence

>retro_mmur_449
CCGTTGGCCGTCACCGTCAGCACGGGCCGAGCGCTGCCGGGCGGCTTTGGGTACAGCCCCTTCCTCGGATCCCACCTGGC
AGCACGCCCGCGCAGGACGCAGGCTGGGGCGGTCTCCCGCTTGGGGTGCTGGGAATGTCGGGGGCTTCAGGGACACGTTT
GGGATGATGGAGGACGTGGTTGGGAACACGGAGCACGCGGCAGCCGGAAGAAACTGCGGGGCTTTTCGGTCTTCTTCCGT
CGAGTCCCGCTCCAGTACGGGTGACGGT

Alignment

ORF - retro_mmur_449 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 56.12 %
• Parental protein coverage: 64.43 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  PFAIHRQQMSRMSGGFGYSPFLSITDGNMPGTRPASRRMQAGAVS-PFGMLGMSG-GFMDMFGMMNDMIG
          P.A..........GGFGYSPFL....G.....RP..RR.QAGAVS.P.G.LGMSG.GF.D.FGMM.D..G
Retrocopy PLAVTVSTGRALPGGFGYSPFL----GSHLAARP--RRTQAGAVS<PLGVLGMSG<GFRDTFGMMEDVVG

Parental  NMEHMTAGGNCQTFSSSTVISYSNTGDG
          N.EH..AG.NC..F.SS.V.S.S.TGDG
Retrocopy NTEHAAAGRNCGAFRSSSVESRSSTGDG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_449 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_449 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000000758	2 retrocopies	retro_dnov_1602, retro_dnov_649,
Echinops telfairi	ENSETEG00000014471	2 retrocopies	retro_etel_1236, retro_etel_233,
Microcebus murinus	ENSMICG00000010652	1 retrocopy	retro_mmur_449 ,
Monodelphis domestica	ENSMODG00000018113	1 retrocopy	retro_mdom_324,
Mus musculus	ENSMUSG00000030120	1 retrocopy	retro_mmus_1090,
Otolemur garnettii	ENSOGAG00000005976	1 retrocopy	retro_ogar_232,
Procavia capensis	ENSPCAG00000001026	1 retrocopy	retro_pcap_326,
Ictidomys tridecemlineatus	ENSSTOG00000009908	1 retrocopy	retro_itri_1707,