RetrogeneDB ID: retro_mmur_419

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_2935:34507..34720(+)
• Located in intron of: ENSMICG00000015531

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: UBE2E2
• Ensembl ID: ENSMICG00000016799
• Aliases: None
• Description: ubiquitin-conjugating enzyme E2E 2 [Source:HGNC Symbol;Acc:12478]

Sequence

>retro_mmur_419
ATGCAGAAACAGCCAGCTGAAATAACCCCGATTCTCTGCCGAACGGCAGTGCGGAGCCTGAAGGAGACAACATTTATGAG
TGGAGATTGACTGGACCTGGCCCCCAGTTTCTGTATATGGGGGTGTTGTGTTTTCTCTGGATGTCAAATGTTCATCAGAT
TATCCACTTCAGCCACCAAAGTTATCTCCTGCACCAGAACCTGTCACTGCAGT

Alignment

ORF - retro_mmur_419 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 58.67 %
• Parental protein coverage: 50.7 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  IQKELAEITL-DPPPNCSAGPKGDNIYEWRSTILG-PPGSVYEGGVFFLDITFSPDYPFKPP-KVTFRTR
          .QK..AEIT..D..PN.SA.P.GDNIYEWR.T..G.PP.SVY.G.VF.LD...S.DYP..PP.KV...TR
Retrocopy MQKQPAEITP<DSLPNGSAEPEGDNIYEWRLTGPG<PPVSVYGGVVFSLDVKCSSDYPLQPP<KVISCTR

Parental  IYHCN
          ..HC.
Retrocopy TCHCS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_419 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_419 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 24 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000010341	2 retrocopies	retro_chof_1304, retro_chof_674,
Ciona intestinalis	ENSCING00000006860	1 retrocopy	retro_cint_33,
Dasypus novemcinctus	ENSDNOG00000005448	7 retrocopies	retro_dnov_1217, retro_dnov_1281, retro_dnov_1360, retro_dnov_156, retro_dnov_2026, retro_dnov_2508, retro_dnov_424,
Felis catus	ENSFCAG00000007748	2 retrocopies	retro_fcat_1582, retro_fcat_913,
Microcebus murinus	ENSMICG00000004882	1 retrocopy	retro_mmur_1295,
Microcebus murinus	ENSMICG00000010253	1 retrocopy	retro_mmur_586,
Microcebus murinus	ENSMICG00000016799	3 retrocopies	retro_mmur_1075, retro_mmur_15, retro_mmur_419 ,
Myotis lucifugus	ENSMLUG00000025144	1 retrocopy	retro_mluc_712,
Ochotona princeps	ENSOPRG00000010615	2 retrocopies	retro_opri_329, retro_opri_788,
Tursiops truncatus	ENSTTRG00000005156	1 retrocopy	retro_ttru_1075,
Vicugna pacos	ENSVPAG00000007007	3 retrocopies	retro_vpac_108, retro_vpac_315, retro_vpac_425,